SMTL ID : 4mx5.1

Structure of ricin A chain bound with benzyl-(2-(2-amino-4-oxo-3,4-dihydropteridine-7-carboxamido)ethyl)carbamate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x 5MX: benzyl (2-{[(2-amino-4-oxo-3,4-dihydropteridin-7-yl)carbonyl]amino}ethyl)carbamate(Non-covalent)

5MX.1: 11 residues within 4Å: Chain A: A.80, Y.81, V.82, F.94, G.122, N.123, Y.124, I.173, S.177, E.178, R.181 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:Y.81, A:V.82, A:V.82, A:V.82, A:N.123, A:Y.124, A:S.177, A:R.181, A:R.181 Water bridges: A:Y.81, A:Y.81, A:Y.81, A:Y.81, A:G.122, A:D.125, A:E.178, A:E.209 pi-Stacking: A:Y.81, A:Y.81, A:Y.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiget, P.A. et al., Sulfur incorporation generally improves Ricin inhibition in pterin-appended glycine-phenylalanine dipeptide mimics. Bioorg.Med.Chem.Lett. (2013)

Release Date

2014-01-15

Peptides

Ricin A chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Ricin A chain

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