- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 2F1: 1-(4-bromophenyl)-3-{2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}urea(Non-covalent)
2F1.2: 13 residues within 4Å:- Chain A: A.146, H.147, T.203, M.284, G.285, M.290, V.309, E.311
- Chain D: V.25, S.336, G.339, Y.340
- Ligands: IMP.1
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain A- Hydrophobic interactions: D:Y.340, A:A.146
- Hydrogen bonds: A:E.311, A:E.311
- Water bridges: A:A.146
2F1.9: 13 residues within 4Å:- Chain B: A.146, H.147, T.203, M.284, G.285, M.290, V.309, E.311
- Chain C: V.25, S.336, G.339, Y.340
- Ligands: IMP.8
5 PLIP interactions:1 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:Y.340, B:A.146
- Hydrogen bonds: B:E.311, B:E.311
- Water bridges: B:A.146
2F1.16: 13 residues within 4Å:- Chain A: V.25, S.336, G.339, Y.340
- Chain C: A.146, H.147, T.203, M.284, G.285, M.290, V.309, E.311
- Ligands: IMP.15
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:A.146, A:Y.340
- Hydrogen bonds: C:E.311, C:E.311
- Water bridges: C:A.146
2F1.23: 13 residues within 4Å:- Chain B: V.25, S.336, G.339, Y.340
- Chain D: A.146, H.147, T.203, M.284, G.285, M.290, V.309, E.311
- Ligands: IMP.22
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain B- Hydrophobic interactions: D:A.146, B:Y.340
- Hydrogen bonds: D:E.311, D:E.311
- Water bridges: D:A.146
- 4 x K: POTASSIUM ION(Non-covalent)
K.3: 8 residues within 4Å:- Chain A: G.196, P.197, G.198, C.201
- Chain D: E.365, S.366, H.367, H.369
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain A- Metal complexes: D:E.365, D:S.366, D:H.367, A:G.198, A:C.201
K.10: 8 residues within 4Å:- Chain B: G.196, P.197, G.198, C.201
- Chain C: E.365, S.366, H.367, H.369
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain C- Metal complexes: B:G.198, B:C.201, C:E.365, C:S.366, C:H.367
K.17: 8 residues within 4Å:- Chain A: E.365, S.366, H.367, H.369
- Chain C: G.196, P.197, G.198, C.201
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Metal complexes: A:E.365, A:S.366, A:H.367, C:G.198, C:C.201
K.24: 8 residues within 4Å:- Chain B: E.365, S.366, H.367, H.369
- Chain D: G.196, P.197, G.198, C.201
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Metal complexes: B:E.365, B:S.366, B:H.367, D:G.198, D:C.201
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 2 residues within 4Å:- Chain A: H.57, R.58
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.57
SO4.11: 2 residues within 4Å:- Chain B: H.57, R.58
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:H.57
SO4.18: 2 residues within 4Å:- Chain C: H.57, R.58
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:H.57
SO4.25: 2 residues within 4Å:- Chain D: H.57, R.58
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:H.57
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.5: 1 residues within 4Å:- Chain A: R.65
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.65
PO4.6: 4 residues within 4Å:- Chain A: R.276, Y.278, R.316
- Chain D: T.372
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:Y.278, A:Y.278, D:T.372, D:T.372
- Water bridges: A:R.276
- Salt bridges: A:R.316
PO4.7: 3 residues within 4Å:- Chain A: Y.273, Q.274, R.316
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.273, A:Y.273, A:Q.274, A:R.316
PO4.12: 1 residues within 4Å:- Chain B: R.65
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.65
PO4.13: 4 residues within 4Å:- Chain B: R.276, Y.278, R.316
- Chain C: T.372
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain B- Hydrogen bonds: C:T.372, C:T.372, B:Y.278, B:Y.278
- Water bridges: B:R.276
- Salt bridges: B:R.316
PO4.14: 3 residues within 4Å:- Chain B: Y.273, Q.274, R.316
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.273, B:Y.273, B:Q.274, B:R.316
PO4.19: 1 residues within 4Å:- Chain C: R.65
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.65
PO4.20: 4 residues within 4Å:- Chain A: T.372
- Chain C: R.276, Y.278, R.316
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:Y.278, C:Y.278, A:T.372, A:T.372
- Water bridges: C:R.276
- Salt bridges: C:R.316
PO4.21: 3 residues within 4Å:- Chain C: Y.273, Q.274, R.316
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:Y.273, C:Y.273, C:Q.274, C:R.316
PO4.26: 1 residues within 4Å:- Chain D: R.65
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:R.65
PO4.27: 4 residues within 4Å:- Chain B: T.372
- Chain D: R.276, Y.278, R.316
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:Y.278, D:Y.278, B:T.372, B:T.372
- Water bridges: D:R.276
- Salt bridges: D:R.316
PO4.28: 3 residues within 4Å:- Chain D: Y.273, Q.274, R.316
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Y.273, D:Y.273, D:Q.274, D:R.316
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase, with a Internal Deletion of CBS Domain from Campylobacter jejuni complexed with inhibitor compound P12. To be Published (2013)
- Release Date
- 2014-01-01
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 2F1: 1-(4-bromophenyl)-3-{2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}urea(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase, with a Internal Deletion of CBS Domain from Campylobacter jejuni complexed with inhibitor compound P12. To be Published (2013)
- Release Date
- 2014-01-01
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A