SMTL ID : 4mzg.2 (1 other biounit)

Crystal structure of human Spindlin1 bound to histone H3K4me3 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-oligomer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 7 residues within 4Å: Chain B: H.20, W.22, W.32, Y.51, Y.58, L.60, F.211 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:W.22, B:W.32, B:W.32, B:Y.58, B:L.60, B:F.211 Hydrogen bonds: B:W.22 MPD.2: 7 residues within 4Å: Chain B: G.113, M.114, T.129, Y.130, E.131, V.215, D.217 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:M.114 Hydrogen bonds: B:D.217

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain B: W.111, R.112, K.132 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: W.125 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, X. et al., Molecular basis underlying histone H3 lysine-arginine methylation pattern readout by Spin/Ssty repeats of Spindlin1. Genes Dev. (2014)

Release Date

2014-03-26

Peptides

Peptide from Histone H3.2: A
Spindlin-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Peptide from Histone H3.2

Spindlin-1

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