SMTL ID : 4mzh.1

Crystal structure of human Spindlin1 bound to histone H3(K4me3-R8me2s) peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- M3L- GLN- THR- ALA: Peptide from Histone H3.2(Non-covalent)

ALA-ARG-THR-M3L-GLN-THR-ALA.1: 13 residues within 4Å: Chain A: G.55, D.57, M.102, F.103, E.104, W.113, Y.132, D.135, Y.139, Y.141, Q.142, D.146, D.151 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:E.104 Hydrogen bonds: A:D.57, A:D.57, A:E.104, A:E.104, A:Q.142, A:Q.142, A:D.151 Water bridges: A:M.102, A:D.151 Salt bridges: A:D.146 pi-Cation interactions: A:F.103, A:W.113, A:W.113, A:Y.132

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: E.100 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Su, X. et al., Molecular basis underlying histone H3 lysine-arginine methylation pattern readout by Spin/Ssty repeats of Spindlin1. Genes Dev. (2014)

Release Date

2014-03-26

Peptides

Spindlin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Spindlin-1

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