- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 4 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)
FNR.4: 24 residues within 4Å:- Chain A: H.30, I.31, A.34, N.80, A.81, M.82, G.110, S.111, N.138, H.163, K.200, E.201, V.202, G.203, S.225, G.229, T.230, F.232, G.273, G.274, L.294, S.295, R.296
- Ligands: SO4.3
27 PLIP interactions:27 interactions with chain A- Hydrophobic interactions: A:I.31, A:A.34, A:M.82
- Hydrogen bonds: A:A.81, A:S.111, A:N.138, A:N.138, A:K.200, A:K.200, A:K.200, A:S.225, A:T.230, A:T.230, A:T.230, A:G.273, A:G.274, A:S.295, A:S.295, A:R.296
- Water bridges: A:K.27, A:K.27, A:M.82, A:G.229, A:S.272, A:V.275, A:V.275
- pi-Stacking: A:F.232
FNR.8: 24 residues within 4Å:- Chain B: H.30, I.31, A.34, N.80, A.81, M.82, G.110, S.111, N.138, H.163, K.200, E.201, V.202, G.203, S.225, G.229, T.230, F.232, G.273, G.274, L.294, S.295, R.296
- Ligands: SO4.7
27 PLIP interactions:27 interactions with chain B- Hydrophobic interactions: B:I.31, B:A.34, B:M.82
- Hydrogen bonds: B:A.81, B:S.111, B:N.138, B:N.138, B:K.200, B:K.200, B:K.200, B:S.225, B:T.230, B:T.230, B:T.230, B:G.273, B:G.274, B:S.295, B:S.295, B:R.296
- Water bridges: B:K.27, B:K.27, B:M.82, B:G.229, B:S.272, B:V.275, B:V.275
- pi-Stacking: B:F.232
FNR.12: 24 residues within 4Å:- Chain C: H.30, I.31, A.34, N.80, A.81, M.82, G.110, S.111, N.138, H.163, K.200, E.201, V.202, G.203, S.225, G.229, T.230, F.232, G.273, G.274, L.294, S.295, R.296
- Ligands: SO4.11
27 PLIP interactions:27 interactions with chain C- Hydrophobic interactions: C:I.31, C:A.34, C:M.82
- Hydrogen bonds: C:A.81, C:S.111, C:N.138, C:N.138, C:K.200, C:K.200, C:K.200, C:S.225, C:T.230, C:T.230, C:T.230, C:G.273, C:G.274, C:S.295, C:S.295, C:R.296
- Water bridges: C:K.27, C:K.27, C:M.82, C:G.229, C:S.272, C:V.275, C:V.275
- pi-Stacking: C:F.232
FNR.16: 24 residues within 4Å:- Chain D: H.30, I.31, A.34, N.80, A.81, M.82, G.110, S.111, N.138, H.163, K.200, E.201, V.202, G.203, S.225, G.229, T.230, F.232, G.273, G.274, L.294, S.295, R.296
- Ligands: SO4.15
27 PLIP interactions:27 interactions with chain D- Hydrophobic interactions: D:I.31, D:A.34, D:M.82
- Hydrogen bonds: D:A.81, D:S.111, D:N.138, D:N.138, D:K.200, D:K.200, D:K.200, D:S.225, D:T.230, D:T.230, D:T.230, D:G.273, D:G.274, D:S.295, D:S.295, D:R.296
- Water bridges: D:K.27, D:K.27, D:M.82, D:G.229, D:S.272, D:V.275, D:V.275
- pi-Stacking: D:F.232
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Ruyck, J. et al., Determination of Kinetics and the Crystal Structure of a Novel Type 2 Isopentenyl Diphosphate: Dimethylallyl Diphosphate Isomerase from Streptococcus pneumoniae. Chembiochem (2014)
- Release Date
- 2014-07-02
- Peptides
- Isopentenyl-diphosphate delta-isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 4 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Ruyck, J. et al., Determination of Kinetics and the Crystal Structure of a Novel Type 2 Isopentenyl Diphosphate: Dimethylallyl Diphosphate Isomerase from Streptococcus pneumoniae. Chembiochem (2014)
- Release Date
- 2014-07-02
- Peptides
- Isopentenyl-diphosphate delta-isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A