SMTL ID : 4n0y.1

Structure of the Hepatitis C Envelope Glycoprotein E1 antigenic region 314-324 bound to the cross-neutralizing antibody IGH526

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-1-mer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.73, D.74, T.75, S.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.75, A:T.75, A:S.76 GOL.2: 2 residues within 4Å: Chain A: G.108 Chain C: R.4 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Water bridges: A:L.105 Hydrogen bonds: C:R.4, C:R.4 GOL.3: 9 residues within 4Å: Chain A: Q.40, R.45, L.46 Chain B: H.41, D.88, F.90, G.104, G.105, G.106 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:L.46, B:H.41, B:G.104 Water bridges: B:D.88, B:G.105 GOL.4: 7 residues within 4Å: Chain B: A.149, V.150, T.151, T.202, H.203, E.204, G.205 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.151, B:E.204, B:E.204, B:G.205 GOL.5: 5 residues within 4Å: Chain B: K.155, D.157, S.158, S.198, E.209 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.157, B:S.198 GOL.6: 7 residues within 4Å: Chain A: F.179, V.194 Chain B: S.120, T.122, L.141, I.142, S.143 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.196 GOL.7: 3 residues within 4Å: Chain B: A.118, P.119, V.208 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.119

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 3 residues within 4Å: Chain B: N.34, T.35 Chain C: H.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kong, L. et al., Structure of Hepatitis C Virus Envelope Glycoprotein E1 Antigenic Site 314-324 in Complex with Antibody IGH526. J.Mol.Biol. (2015)

Release Date

2015-04-01

Peptides

IGH526 Heavy Chain: A
IGH526 Light Chain: B
HCV E1 peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

IGH526 Heavy Chain

IGH526 Light Chain

HCV E1 peptide