SMTL ID : 4n27.1 (1 other biounit)

X-ray structure of Brucella abortus RicA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

homo-trimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.87, H.109 Chain B: Q.81, H.104 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:H.104, A:H.87, A:H.109, H2O.1, H2O.1 ZN.4: 3 residues within 4Å: Chain B: H.87, H.109 Chain C: H.104 5 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: C:H.104, B:H.87, B:H.109, H2O.1, H2O.1 ZN.5: 3 residues within 4Å: Chain A: H.104 Chain C: H.87, H.109 5 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:H.87, C:H.109, A:H.104, H2O.1, H2O.1

3 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.2: 15 residues within 4Å: Chain A: R.66, D.68, N.69, H.87, D.89, E.145 Chain B: Q.81, T.101, G.103, L.118, G.120, M.121, S.177, Y.181, R.184 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:N.69, A:D.89, B:Q.81, B:M.121 Hydrophobic interactions: B:Y.181 Water bridges: B:Y.181 PE5.3: 17 residues within 4Å: Chain A: Q.81, T.101, G.103, L.118, G.120, M.121, G.138, A.139, S.177, Y.181, R.184 Chain C: R.66, D.68, N.69, H.87, D.89, E.145 7 PLIP interactions: 5 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:R.66, C:D.68, C:N.69, C:D.89, C:E.145, A:Q.81, A:M.121 PE5.6: 19 residues within 4Å: Chain B: R.66, D.68, N.69, H.87, D.89, L.126, L.142 Chain C: Q.81, T.101, G.103, L.118, G.120, M.121, G.138, A.139, V.156, G.157, Y.181, R.184 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.81, C:M.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herrou, J. et al., Molecular Structure of the Brucella abortus Metalloprotein RicA, a Rab2-Binding Virulence Effector. Biochemistry (2013)

Release Date

2013-12-11

Peptides

Bacterial transferase hexapeptide repeat: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Bacterial transferase hexapeptide repeat

Related Entries With Identical Sequence