SMTL ID : 4n2c.1

Crystal structure of Protein Arginine Deiminase 2 (F221/222A, 10 mM Ca2+)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.02 Å

Oligo State

homo-dimer

Ligands

12 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.177, E.179, D.201, D.410 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.177, A:E.179, A:D.201 CA.2: 6 residues within 4Å: Chain A: N.175, D.177, E.179, D.187, D.198, D.201 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.177, A:D.187 CA.3: 3 residues within 4Å: Chain A: D.187, D.190, K.192 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.187, A:D.190, A:K.192 CA.4: 5 residues within 4Å: Chain A: Q.371, E.375, F.429, L.432, E.433 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.375, A:F.429, A:L.432, A:E.433 CA.5: 4 residues within 4Å: Chain A: E.373, D.391, S.392, D.395 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.373, A:D.391, A:D.391, A:S.392, A:D.395 CA.6: 5 residues within 4Å: Chain A: D.144, D.146, D.148, V.150, E.152 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.144, A:D.146, A:D.148, A:V.150, A:E.152 CA.7: 4 residues within 4Å: Chain B: D.177, E.179, D.201, D.410 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.177, B:E.179, B:D.201 CA.8: 6 residues within 4Å: Chain B: N.175, D.177, E.179, D.187, D.198, D.201 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.177, B:D.187 CA.9: 3 residues within 4Å: Chain B: D.187, D.190, K.192 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.187, B:D.190, B:K.192 CA.10: 5 residues within 4Å: Chain B: Q.371, E.375, F.429, L.432, E.433 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.375, B:F.429, B:L.432, B:E.433 CA.11: 4 residues within 4Å: Chain B: E.373, D.391, S.392, D.395 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.373, B:D.391, B:D.391, B:S.392, B:D.395 CA.12: 5 residues within 4Å: Chain B: D.144, D.146, D.148, V.150, E.152 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.144, B:D.146, B:D.148, B:V.150, B:E.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Slade, D.J. et al., Protein arginine deiminase 2 binds calcium in an ordered fashion: implications for inhibitor design. Acs Chem.Biol. (2015)

Release Date

2015-02-04

Peptides

Protein-arginine deiminase type-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein-arginine deiminase type-2