SMTL ID : 4n35.4 (5 other biounits)

Structure of langerin CRD I313 complexed with GlcNAc-beta1-3Gal-beta1-4Glc-beta-CH2CH2N3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NAG.1: 8 residues within 4Å: Chain A: E.93, N.95, E.101, K.107, N.115, D.116, I.121 Ligands: CA.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.107, A:K.107, A:N.95, A:E.101, A:E.101, A:N.115 Hydrophobic interactions: A:I.121 Water bridges: A:E.101, A:E.101, A:N.105, A:K.107, A:K.107

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.93, N.95, E.101, N.115, D.116 Ligands: BGC-GAL-NAG.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.93, A:E.101, A:D.116, A:D.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Common polymorphisms in human langerin change specificity for glycan ligands. J.Biol.Chem. (2013)

Release Date

2013-11-20

Peptides

C-type lectin domain family 4 member K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C-type lectin domain family 4 member K

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