SMTL ID : 4n3d.1 (1 other biounit)

Crystal structure of the dimeric variant EGFP-K162Q in P61 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: K.111, D.112 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:D.112, A:D.112, A:D.112, A:D.112 Water bridges: A:K.111, A:K.111, A:K.111, A:K.111, A:D.113, A:D.113 Salt bridges: A:K.111 PO4.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x K: POTASSIUM ION(Non-covalent)

K.3: 3 residues within 4Å: Chain A: H.149, L.151, E.182 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.149, A:E.182, H2O.11 K.4: 2 residues within 4Å: Chain A: Y.155, S.215 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.155, A:S.215, H2O.2 K.5: 2 residues within 4Å: Chain A: G.148, H.149 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.148, A:H.149, H2O.4, H2O.5, H2O.9

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: V.23, D.48, Y.51 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Water bridges: A:T.21, A:G.22, A:T.50 GOL.7: 3 residues within 4Å: Chain A: D.48, Y.51 Ligands: GOL.6 No protein-ligand interaction detected (PLIP) GOL.8: 3 residues within 4Å: Chain A: G.36, H.37, K.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pletneva, N.V. et al., Three dimensional structure of the dimeric gene-engineered variant of green fluorescent protein egfp-K162Q in P61 crystal space group. Rus.J.Bioorg.Chem. (2014)

Release Date

2014-08-27

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein

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