- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
NA.2: 5 residues within 4Å:- Chain A: E.124
- Chain B: E.124
- Chain C: E.124
- Ligands: NA.8, NA.14
4 PLIP interactions:1 interactions with chain B, 2 interactions with chain C, 1 interactions with chain A- Water bridges: B:E.124, C:E.124, A:E.124
- Hydrogen bonds: C:E.124
NA.8: 5 residues within 4Å:- Chain A: E.124
- Chain B: E.124
- Chain C: E.124
- Ligands: NA.2, NA.14
4 PLIP interactions:1 interactions with chain B, 1 interactions with chain C, 2 interactions with chain A- Water bridges: B:E.124, C:E.124, A:E.124
- Hydrogen bonds: A:E.124
NA.14: 5 residues within 4Å:- Chain A: E.124
- Chain B: E.124
- Chain C: E.124
- Ligands: NA.2, NA.8
4 PLIP interactions:2 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: B:E.124
- Water bridges: B:E.124, C:E.124, A:E.124
- 3 x CIT: CITRIC ACID(Non-functional Binders)
CIT.3: 12 residues within 4Å:- Chain A: K.43, T.106, P.107
- Chain B: K.43, P.107, W.121
- Chain C: K.43, T.106, P.107, W.121
- Ligands: CIT.9, CIT.15
9 PLIP interactions:2 interactions with chain B, 4 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: B:P.107, C:P.107
- Salt bridges: B:K.43, C:K.43, C:K.43, A:K.43, A:K.43
- Hydrogen bonds: C:T.106, A:T.106
CIT.9: 12 residues within 4Å:- Chain A: K.43, T.106, P.107, W.121
- Chain B: K.43, T.106, P.107
- Chain C: K.43, P.107, W.121
- Ligands: CIT.3, CIT.15
9 PLIP interactions:3 interactions with chain B, 4 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: B:T.106, A:T.106
- Salt bridges: B:K.43, B:K.43, A:K.43, A:K.43, C:K.43
- Hydrophobic interactions: A:P.107, C:P.107
CIT.15: 12 residues within 4Å:- Chain A: K.43, P.107, W.121
- Chain B: K.43, T.106, P.107, W.121
- Chain C: K.43, T.106, P.107
- Ligands: CIT.3, CIT.9
9 PLIP interactions:4 interactions with chain B, 2 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: B:P.107, A:P.107
- Hydrogen bonds: B:T.106, C:T.106
- Salt bridges: B:K.43, B:K.43, A:K.43, C:K.43, C:K.43
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 4 residues within 4Å:- Chain A: R.51, L.57
- Chain B: R.120, F.144
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.120, A:R.51, A:R.51
- Water bridges: B:R.120
EDO.10: 4 residues within 4Å:- Chain B: R.51, L.57
- Chain C: R.120, F.144
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:R.51, B:R.51, C:R.120
- Water bridges: C:R.120
EDO.16: 4 residues within 4Å:- Chain A: R.120, F.144
- Chain C: R.51, L.57
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:R.120, C:R.51, C:R.51
- Water bridges: A:R.120
- 3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.5: 4 residues within 4Å:- Chain A: V.79, H.81, E.85, E.88
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.81
1PE.11: 4 residues within 4Å:- Chain B: V.79, H.81, E.85, E.88
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.81
1PE.17: 4 residues within 4Å:- Chain C: V.79, H.81, E.85, E.88
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.81
- 3 x UNL: UNKNOWN LIGAND
UNL.6: 8 residues within 4Å:- Chain A: Y.49, G.76, K.77, F.80, V.86, Y.89, L.90, T.161
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.76, A:Y.89, A:Y.89
UNL.12: 8 residues within 4Å:- Chain B: Y.49, G.76, K.77, F.80, V.86, Y.89, L.90, T.161
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.76, B:Y.89, B:Y.89
UNL.18: 8 residues within 4Å:- Chain C: Y.49, G.76, K.77, F.80, V.86, Y.89, L.90, T.161
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.76, C:Y.89, C:Y.89
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a bile-acid 7-alpha dehydratase (CLOHIR_00079) from Clostridium hiranonis DSM 13275 at 1.89 A resolution with product added. To be published
- Release Date
- 2013-12-04
- Peptides
- Bile acid 7-alpha dehydratase, BaiE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 3 x NA: SODIUM ION(Non-functional Binders)
- 3 x CIT: CITRIC ACID(Non-functional Binders)
- 3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 3 x UNL: UNKNOWN LIGAND
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a bile-acid 7-alpha dehydratase (CLOHIR_00079) from Clostridium hiranonis DSM 13275 at 1.89 A resolution with product added. To be published
- Release Date
- 2013-12-04
- Peptides
- Bile acid 7-alpha dehydratase, BaiE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A