SMTL ID : 4n5h.1

Crystal structure of ESTERASE B from Lactobacillus Rhamnosis (HN001)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

homo-tetramer

Ligands

12 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 2 residues within 4Å: Chain A: K.266, W.268 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.268 Water bridges: A:K.266, A:E.296 IPA.2: 3 residues within 4Å: Chain A: K.23, Y.26, R.86 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.26 Hydrogen bonds: A:R.86, A:R.86 IPA.3: 5 residues within 4Å: Chain A: W.268, P.288, E.289, E.292 Chain D: Q.132 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.268 Hydrogen bonds: A:E.292 IPA.6: 2 residues within 4Å: Chain B: K.266, W.268 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.268 Water bridges: B:K.266, B:E.296 IPA.7: 3 residues within 4Å: Chain B: K.23, Y.26, R.86 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.26 Hydrogen bonds: B:R.86, B:R.86 IPA.8: 5 residues within 4Å: Chain B: W.268, P.288, E.289, E.292 Chain C: Q.132 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.268 Hydrogen bonds: B:E.292 IPA.11: 2 residues within 4Å: Chain C: K.266, W.268 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:W.268 Water bridges: C:K.266, C:E.296 IPA.12: 3 residues within 4Å: Chain C: K.23, Y.26, R.86 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:Y.26 Hydrogen bonds: C:R.86, C:R.86 IPA.13: 5 residues within 4Å: Chain A: Q.132 Chain C: W.268, P.288, E.289, E.292 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:W.268 Hydrogen bonds: C:E.292 IPA.16: 2 residues within 4Å: Chain D: K.266, W.268 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:W.268 Water bridges: D:K.266, D:E.296 IPA.17: 3 residues within 4Å: Chain D: K.23, Y.26, R.86 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:Y.26 Hydrogen bonds: D:R.86, D:R.86 IPA.18: 5 residues within 4Å: Chain B: Q.132 Chain D: W.268, P.288, E.289, E.292 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:W.268 Hydrogen bonds: D:E.292

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: V.35, H.36, W.37 Chain C: R.30 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: V.35, H.36, W.37 Chain D: R.30 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain B: R.30 Chain C: V.35, H.36, W.37 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain A: R.30 Chain D: V.35, H.36, W.37 Ligand excluded by PLIP

4 x CA: CALCIUM ION(Non-covalent)

CA.5: 1 residues within 4Å: Chain A: T.65 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.65, A:T.65, H2O.3, H2O.6, H2O.11 CA.10: 1 residues within 4Å: Chain B: T.65 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.65, B:T.65, H2O.15, H2O.18, H2O.22 CA.15: 1 residues within 4Å: Chain C: T.65 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:T.65, C:T.65, H2O.26, H2O.29, H2O.34 CA.20: 1 residues within 4Å: Chain D: T.65 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:T.65, D:T.65, H2O.38, H2O.41, H2O.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bennett, M.D. et al., Crystal structure of ESTERASE B from Lactobacillus Rhamnosis (HN001). TO BE PUBLISHED

Release Date

2014-10-15

Peptides

Esterase/lipase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

C
X

D
X

Esterase/lipase

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