SMTL ID : 4n6f.1

Crystal structure of Amycolatopsis orientalis BexX complexed with G6P

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.56, D.58 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:D.56, A:D.58, H2O.1, H2O.2 CA.2: 3 residues within 4Å: Chain A: D.68, D.71, E.72 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.68, A:D.71, A:E.72, H2O.1, H2O.1 CA.3: 1 residues within 4Å: Chain A: G.188 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.188, H2O.2, H2O.2, H2O.2 CA.5: 3 residues within 4Å: Chain B: Q.32, D.34 Ligands: CA.7 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:Q.32, B:D.34 CA.6: 2 residues within 4Å: Chain B: I.184, I.187 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:I.184, B:I.187, H2O.4, H2O.4, H2O.4, H2O.4 CA.7: 2 residues within 4Å: Chain B: D.34 Ligands: CA.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.34, B:D.34

2 x F6R: FRUCTOSE -6-PHOSPHATE(Covalent)

F6R.4: 15 residues within 4Å: Chain A: G.29, E.31, S.85, K.110, D.112, R.114, F.142, R.162, V.168, A.169, E.194, G.195, G.196, N.217, T.218 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:K.110 Hydrogen bonds: A:R.114, A:R.114, A:R.162, A:A.169, A:E.194, A:G.195, A:G.196, A:N.217, A:N.217, A:T.218 Water bridges: A:I.197, A:I.197, A:A.219 F6R.8: 17 residues within 4Å: Chain B: G.29, E.31, T.83, S.85, K.110, D.112, R.114, F.142, R.162, V.168, A.169, E.194, G.195, G.196, L.215, N.217, T.218 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:K.110 Hydrogen bonds: B:K.110, B:R.114, B:R.114, B:A.169, B:G.195, B:G.196, B:N.217, B:N.217, B:T.218 Water bridges: B:I.197, B:I.197, B:A.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sasaki, E. et al., Co-opting sulphur-carrier proteins from primary metabolic pathways for 2-thiosugar biosynthesis. Nature (2014)

Release Date

2014-05-14

Peptides

Putative thiosugar synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative thiosugar synthase

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