SMTL ID : 4n6p.1

Crystal Structure of C-lobe of Bovine lactoferrin complexed with meclofenamic acid at 1.4 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x LEU- GLU- ALA- CYS- ALA- PHE: C-terminal peptide from Lactotransferrin(Non-covalent)

LEU-GLU-ALA-CYS-ALA-PHE.1: 7 residues within 4Å: Chain A: D.37, I.40, V.41, L.44, T.60, K.63, C.64 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.37, A:I.40, A:V.41, A:L.44, A:T.60

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 7 residues within 4Å: Chain A: G.131, L.132, N.135, E.323, T.326, A.327, N.330 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.330 NAG-NAG.3: 8 residues within 4Å: Chain A: S.77, L.93, N.204, D.205, W.208, E.209, E.214, Q.244 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.77 Water bridges: A:R.225

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 2 residues within 4Å: Chain A: G.312, E.318 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.318, A:E.318

1 x FE: FE (III) ION(Non-covalent)

FE.5: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.6: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.118, A:T.123, A:A.124, A:G.125

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain A: K.100, R.229, R.237 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.100, A:R.229, A:R.237 Salt bridges: A:R.229, A:R.237

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 5 residues within 4Å: Chain A: S.24, N.27, H.272, Q.273, L.276 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.276 Hydrogen bonds: A:N.27, A:Q.273 Water bridges: A:T.2, A:T.2, A:S.24

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 6 residues within 4Å: Chain A: W.107, N.108, L.110, Q.136, T.137, F.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.107, A:L.110 GOL.10: 5 residues within 4Å: Chain A: S.178, E.180, K.181, R.190, K.296 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.178, A:R.190, A:R.190

1 x JMS: 2-[(2,6-dichloro-3-methyl-phenyl)amino]benzoic acid(Non-covalent)

JMS.11: 5 residues within 4Å: Chain A: H.247, L.248, A.249, V.250, E.323 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.250 Hydrogen bonds: A:V.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gautam, L. et al., Crystal Structre of C-LOBE OF BOVINE LACTOFERRIN COMPLEXED WITH MECLOFENAMIC ACID AT 1.4 A RESOLUTION. TO BE PUBLISHED

Release Date

2013-10-30

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin