SMTL ID : 4n6q.1

Crystal structure of VosA velvet domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

6 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain B: L.61, Y.65 Ligands: IOD.2 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain B: Y.70 Ligands: IOD.1 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: D.79, A.86, S.87 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: L.61, Y.65 Ligands: IOD.7 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: Y.70 Ligands: IOD.6 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain B: D.79, A.86, S.87 Ligand excluded by PLIP

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 5 residues within 4Å: Chain A: N.29, R.30, D.45, P.46, A.166 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.29, A:D.45, A:D.45 NO3.5: 2 residues within 4Å: Chain A: F.162, G.164 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.32 Water bridges: A:M.165 NO3.9: 5 residues within 4Å: Chain B: N.29, R.30, D.45, P.46, A.166 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.29, B:D.45 NO3.10: 2 residues within 4Å: Chain B: F.162, G.164 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.32 Water bridges: B:M.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmed, Y.L. et al., The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-kappa B. Plos Biol. (2013)

Release Date

2014-01-22

Peptides

VosA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

VosA

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