SMTL ID : 4n6w.1

X-Ray Crystal Structure of Citrate-bound PhnZ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: D.97, H.100, H.118, H.142 Ligands: FE.2, FLC.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.97, A:H.118, A:H.142, H2O.6 FE.2: 6 residues within 4Å: Chain A: H.72, H.96, D.97, D.199 Ligands: FE.1, FLC.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.72, A:H.96, A:D.97, A:D.199, H2O.6

1 x FLC: CITRATE ANION(Non-covalent)

FLC.3: 16 residues within 4Å: Chain A: Y.62, H.72, D.97, H.100, Y.113, H.118, H.142, K.146, A.163, S.164, T.167, Q.171, R.196, D.199 Ligands: FE.1, FE.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:Y.113, A:S.164, A:Q.171 Water bridges: A:S.164, A:R.196, A:R.196, A:E.200 Salt bridges: A:H.72, A:H.100, A:H.118, A:H.118, A:H.142, A:K.146, A:K.146, A:R.196, A:R.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Worsdorfer, B. et al., Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-11-27

Peptides

Predicted HD phosphohydrolase PhnZ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Predicted HD phosphohydrolase PhnZ