SMTL ID : 4n6z.1

Pim1 Complexed with a pyridylcarboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 2HW: 3-AMINO-N-{4-[(3S)-3-AMINOPIPERIDIN-1-YL]PYRIDIN-3-YL}PYRAZINE-2-CARBOXAMIDE(Non-covalent)

2HW.1: 18 residues within 4Å: Chain A: L.59, G.60, F.64, V.67, A.80, K.82, I.119, L.135, E.136, R.137, V.141, D.143, E.186, N.187, L.189, I.200, D.201 Ligands: GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.64 Hydrogen bonds: A:E.136, A:D.143, A:D.143, A:D.201

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: F.145, I.148, T.149, D.185, D.249, G.253, D.254, I.255 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.249, A:G.253, A:D.254, A:D.254 GOL.3: 10 residues within 4Å: Chain A: G.63, F.64, G.65, V.84, R.88, I.89, S.90, D.91, G.203, D.217 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.88, A:S.90, A:G.203 GOL.4: 7 residues within 4Å: Chain A: L.59, V.141, Q.142, D.143, D.146, L.189 Ligands: 2HW.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.143, A:D.143, A:D.146, A:D.146 Water bridges: A:Q.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burger, M.T. et al., Structure Guided Optimization, in Vitro Activity, and in Vivo Activity of Pan-PIM Kinase Inhibitors. ACS Med Chem Lett (2013)

Release Date

2013-11-06

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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