SMTL ID : 4n73.1

Crystal structure of the ligand binding domain (LBD) of REV-ERB beta bound to Cobalt Protoporphyrin IX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x COH: PROTOPORPHYRIN IX CONTAINING CO(Non-covalent)

COH.1: 25 residues within 4Å: Chain A: H.2, L.3, V.4, C.5, P.6, M.7, W.23, F.26, F.30, V.34, F.64, L.67, M.68, F.71, F.75, G.99, A.100, G.101, L.103, L.104, M.107, H.189, E.192, L.193, F.196 25 PLIP interactions: 25 interactions with chain A, Hydrophobic interactions: A:L.3, A:V.4, A:W.23, A:F.26, A:F.30, A:V.34, A:F.64, A:L.67, A:F.71, A:F.75, A:L.103, A:L.104, A:L.193, A:L.193, A:F.196, A:F.196 Hydrogen bonds: A:V.4, A:G.101, A:L.103, A:L.104 Water bridges: A:D.102 pi-Stacking: A:H.189, A:H.189 Metal complexes: A:C.5, A:H.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matta-Camacho, E. et al., Structure of REV-ERB beta Ligand-binding Domain Bound to a Porphyrin Antagonist. J.Biol.Chem. (2014)

Release Date

2014-06-04

Peptides

Nuclear receptor subfamily 1 group D member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor subfamily 1 group D member 2