SMTL ID : 4n9y.1

Crystal structure of mouse poly(ADP-ribose) glycohydrolase (PARG) catalytic domain mutant E748Q

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.7, L.10, R.465 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.7, A:K.7 Salt bridges: A:K.7, A:R.465 SO4.2: 5 residues within 4Å: Chain A: R.91, Y.120, P.199, R.200, N.202 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.200, A:N.202 Water bridges: A:N.202, A:A.203 Salt bridges: A:R.91, A:R.200 SO4.3: 3 residues within 4Å: Chain A: N.296, R.297, H.384 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.296 Salt bridges: A:R.297, A:H.384 SO4.4: 5 residues within 4Å: Chain A: R.219, G.302, G.305, A.306, G.307 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.306, A:G.307 Salt bridges: A:R.219 SO4.5: 3 residues within 4Å: Chain A: P.28, S.29, R.31 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.29, A:S.29 Salt bridges: A:R.31 SO4.6: 4 residues within 4Å: Chain A: R.200, K.206, S.207, E.208 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.207, A:E.208 Water bridges: A:R.200, A:E.208, A:E.208

1 x V3L: 2'-O-(5-O-phosphono-alpha-D-ribofuranosyl)adenosine 5'-(dihydrogen phosphate)(Non-covalent)

V3L.7: 8 residues within 4Å: Chain A: P.32, V.38, V.40, R.41, V.42, D.43, F.54, T.56 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.38, A:R.41, A:V.42 Water bridges: A:Q.166 Salt bridges: A:R.41 pi-Stacking: A:F.54, A:F.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Z. et al., Crystallographic and biochemical analysis of the mouse poly(ADP-ribose) glycohydrolase. Plos One (2014)

Release Date

2014-01-29

Peptides

Poly(ADP-ribose) glycohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly(ADP-ribose) glycohydrolase