SMTL ID : 4nai.1

Arabidopsis thaliana IspD apo

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: E.93 Ligands: K.11 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.93, A:E.93, H2O.1 CD.2: 2 residues within 4Å: Chain A: E.47, E.117 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.47, A:E.47, A:E.117, A:E.117, H2O.1 CD.17: 2 residues within 4Å: Chain B: E.93 Ligands: K.27 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.93, B:E.93, H2O.7 CD.18: 2 residues within 4Å: Chain B: E.47, E.117 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.47, B:E.47, B:E.117, B:E.117, H2O.7

28 x K: POTASSIUM ION(Non-covalent)

K.3: 3 residues within 4Å: Chain A: D.215 Chain B: R.222, E.226 Ligand excluded by PLIP K.4: 5 residues within 4Å: Chain A: S.43, M.45, V.48, D.71, V.72 Ligand excluded by PLIP K.5: 7 residues within 4Å: Chain A: D.115, L.131, Q.161, G.204, S.205, N.208 Ligands: K.6 Ligand excluded by PLIP K.6: 6 residues within 4Å: Chain A: V.111, N.112, D.115, S.205, N.208 Ligands: K.5 Ligand excluded by PLIP K.7: 6 residues within 4Å: Chain A: R.108, P.109, L.110, V.111, N.208, I.209 Ligand excluded by PLIP K.8: 5 residues within 4Å: Chain A: I.34, A.35, S.38, S.106, P.109 Ligand excluded by PLIP K.9: 6 residues within 4Å: Chain A: Y.37, S.38, T.41, P.109, L.110, V.111 Ligand excluded by PLIP K.10: 1 residues within 4Å: Chain A: A.125 Ligand excluded by PLIP K.11: 3 residues within 4Å: Chain A: Q.92, E.93 Ligands: CD.1 Ligand excluded by PLIP K.12: 2 residues within 4Å: Chain A: E.82, E.184 Ligand excluded by PLIP K.13: 1 residues within 4Å: Chain A: E.117 Ligand excluded by PLIP K.14: 3 residues within 4Å: Chain A: S.89, Q.92, E.93 Ligand excluded by PLIP K.15: 1 residues within 4Å: Chain A: R.75 Ligand excluded by PLIP K.16: 2 residues within 4Å: Chain A: K.49, D.73 Ligand excluded by PLIP K.19: 3 residues within 4Å: Chain A: R.222, E.226 Chain B: D.215 Ligand excluded by PLIP K.20: 5 residues within 4Å: Chain B: S.43, M.45, V.48, D.71, V.72 Ligand excluded by PLIP K.21: 7 residues within 4Å: Chain B: D.115, L.131, Q.161, G.204, S.205, N.208 Ligands: K.22 Ligand excluded by PLIP K.22: 6 residues within 4Å: Chain B: V.111, N.112, D.115, S.205, N.208 Ligands: K.21 Ligand excluded by PLIP K.23: 6 residues within 4Å: Chain B: R.108, P.109, L.110, V.111, N.208, I.209 Ligand excluded by PLIP K.24: 5 residues within 4Å: Chain B: I.34, A.35, S.38, S.106, P.109 Ligand excluded by PLIP K.25: 6 residues within 4Å: Chain B: Y.37, S.38, T.41, P.109, L.110, V.111 Ligand excluded by PLIP K.26: 1 residues within 4Å: Chain B: A.125 Ligand excluded by PLIP K.27: 3 residues within 4Å: Chain B: Q.92, E.93 Ligands: CD.17 Ligand excluded by PLIP K.28: 2 residues within 4Å: Chain B: E.82, E.184 Ligand excluded by PLIP K.29: 1 residues within 4Å: Chain B: E.117 Ligand excluded by PLIP K.30: 3 residues within 4Å: Chain B: S.89, Q.92, E.93 Ligand excluded by PLIP K.31: 1 residues within 4Å: Chain B: R.75 Ligand excluded by PLIP K.32: 2 residues within 4Å: Chain B: K.49, D.73 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kunfermann, A. et al., Pseudilins: Halogenated, Allosteric Inhibitors of the Non-Mevalonate Pathway Enzyme IspD. Angew.Chem.Int.Ed.Engl. (2014)

Release Date

2014-01-29

Peptides

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic

Related Entries With Identical Sequence