SMTL ID : 4nao.1

Crystal structure of EasH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.1: 4 residues within 4Å: Chain A: P.271, L.272, K.275, R.280 4 PLIP interactions: 4 interactions with chain A Water bridges: A:L.272, A:K.275, A:R.280, A:E.303 P6G.5: 4 residues within 4Å: Chain B: P.271, L.272, K.275, R.280 3 PLIP interactions: 3 interactions with chain B Water bridges: B:L.272, B:K.275, B:R.280

2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 9 residues within 4Å: Chain A: Q.150, H.153, D.155, F.176, T.189, H.229, G.231, R.240 Ligands: FE2.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.176, A:F.176 Hydrogen bonds: A:Q.150, A:T.189 Water bridges: A:N.143, A:Q.150, A:S.232 Salt bridges: A:H.153, A:R.240 AKG.6: 9 residues within 4Å: Chain B: Q.150, H.153, D.155, F.176, T.189, H.229, G.231, R.240 Ligands: FE2.8 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.176, B:F.176 Hydrogen bonds: B:Q.150 Water bridges: B:N.143, B:Q.150, B:S.232 Salt bridges: B:H.153, B:R.240

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: V.40, N.196 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.196 NA.7: 2 residues within 4Å: Chain B: V.40, N.196 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.40, B:N.196

2 x FE2: FE (II) ION(Non-covalent)

FE2.4: 4 residues within 4Å: Chain A: H.153, D.155, H.229 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.153, A:D.155, A:H.229, H2O.1 FE2.8: 4 residues within 4Å: Chain B: H.153, D.155, H.229 Ligands: AKG.6 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.153, B:D.155, B:H.229, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Havemann, J. et al., Cyclolization of d-lysergic Acid alkaloid peptides. Chem.Biol. (2014)

Release Date

2014-01-15

Peptides

Putative oxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative oxygenase