SMTL ID : 4nbd.1

Carbazole-bound oxygenase with Phe275 replaced by Trp and ferredoxin complex of carbazole 1,9a-dioxygenase (form2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-3-2-mer

Ligands

3 x FE2: FE (II) ION(Non-covalent)

FE2.1: 3 residues within 4Å: Chain A: H.183, H.187, D.333 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.183, A:H.187, A:D.333, A:D.333, H2O.7 FE2.4: 3 residues within 4Å: Chain B: H.183, H.187, D.333 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.183, B:H.187, B:D.333, B:D.333, H2O.12 FE2.7: 3 residues within 4Å: Chain C: H.183, H.187, D.333 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.183, C:H.187, C:D.333, C:D.333, H2O.19

5 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 9 residues within 4Å: Chain A: C.69, H.71, R.72, V.74, C.90, Y.92, H.93, A.94, W.95 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.69, A:H.71, A:C.90, A:H.93 FES.5: 9 residues within 4Å: Chain B: C.69, H.71, R.72, V.74, C.90, Y.92, H.93, A.94, W.95 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.69, B:H.71, B:C.90, B:H.93 FES.8: 9 residues within 4Å: Chain C: C.69, H.71, R.72, V.74, C.90, Y.92, H.93, A.94, W.95 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.69, C:H.71, C:C.90, C:H.93 FES.10: 9 residues within 4Å: Chain D: C.46, H.48, G.49, A.51, C.65, F.67, H.68, G.70, C.84 4 PLIP interactions: 4 interactions with chain D, Metal complexes: D:C.46, D:H.48, D:C.65, D:H.68 FES.11: 9 residues within 4Å: Chain E: C.46, H.48, G.49, A.51, C.65, F.67, H.68, G.70, C.84 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.46, E:H.48, E:C.65, E:H.68

3 x 9CA: 9H-CARBAZOLE(Non-covalent)

9CA.3: 12 residues within 4Å: Chain A: G.178, H.183, I.184, A.259, I.262, L.270, V.272, W.275, Q.282, E.284, F.329, N.330 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.184, A:A.259, A:I.262, A:L.270, A:V.272, A:F.329 Hydrogen bonds: A:G.178 pi-Stacking: A:W.275, A:W.275 9CA.6: 11 residues within 4Å: Chain B: G.178, H.183, I.184, I.262, L.270, V.272, W.275, Q.282, E.284, F.329, N.330 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.184, B:I.262, B:L.270, B:V.272, B:V.272, B:F.329 Hydrogen bonds: B:G.178 Water bridges: B:N.330 pi-Stacking: B:W.275 9CA.9: 13 residues within 4Å: Chain C: G.178, D.180, H.183, I.184, A.259, I.262, L.270, V.272, W.275, Q.282, E.284, F.329, N.330 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.184, C:A.259, C:I.262, C:L.270, C:V.272, C:W.275, C:F.329 Hydrogen bonds: C:G.178 Water bridges: C:N.330 pi-Stacking: C:W.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inoue, K. et al., Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase. Appl.Environ.Microbiol. (2014)

Release Date

2014-03-26

Peptides

Terminal oxygenase component of carbazole: ABC
Ferredoxin CarAc: DE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Terminal oxygenase component of carbazole

Ferredoxin CarAc

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