SMTL ID : 4nbu.1

Crystal structure of FabG from Bacillus sp

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 27 residues within 4Å: Chain A: G.20, N.23, G.24, I.25, D.44, F.45, N.46, V.65, D.66, V.67, N.93, A.94, G.95, I.96, V.116, T.143, S.144, S.145, Y.158, K.162, P.188, G.189, F.190, T.191, T.193, M.195, V.196 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:P.188 Hydrogen bonds: A:G.20, A:N.23, A:N.23, A:I.25, A:F.45, A:D.66, A:V.67, A:N.93, A:G.95, A:Y.158, A:K.162, A:T.191, A:T.191, A:T.193, A:T.193, A:A.194 Water bridges: A:G.26, A:N.46, A:N.93 pi-Stacking: A:F.45, A:F.45 NAI.2: 28 residues within 4Å: Chain B: G.20, N.23, G.24, I.25, D.44, F.45, N.46, V.65, D.66, V.67, N.93, A.94, G.95, I.96, V.116, T.143, S.144, S.145, Y.158, K.162, P.188, G.189, F.190, T.191, T.193, M.195, V.196 Ligands: CAA.3 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:P.188 Hydrogen bonds: B:G.20, B:N.23, B:N.23, B:I.25, B:F.45, B:D.66, B:V.67, B:N.93, B:G.95, B:K.162, B:T.191, B:T.191, B:T.193, B:T.193 Water bridges: B:G.26, B:N.93 NAI.4: 28 residues within 4Å: Chain C: G.20, N.23, G.24, I.25, D.44, F.45, N.46, V.65, D.66, V.67, N.93, A.94, G.95, I.96, V.116, T.143, S.144, S.145, Y.158, K.162, P.188, G.189, F.190, T.191, T.193, A.194, M.195, V.196 20 PLIP interactions: 20 interactions with chain C Hydrophobic interactions: C:P.188 Hydrogen bonds: C:G.20, C:N.23, C:N.23, C:I.25, C:F.45, C:D.66, C:D.66, C:V.67, C:N.93, C:G.95, C:K.162, C:T.191, C:T.191, C:T.193, C:A.194 Water bridges: C:G.26, C:N.46, C:N.46, C:N.93 NAI.5: 27 residues within 4Å: Chain D: G.20, N.23, G.24, I.25, D.44, F.45, N.46, V.65, D.66, V.67, N.93, A.94, G.95, I.96, V.116, T.143, S.144, S.145, Y.158, K.162, P.188, G.189, F.190, T.191, T.193, M.195, V.196 21 PLIP interactions: 21 interactions with chain D Hydrophobic interactions: D:P.188 Hydrogen bonds: D:G.20, D:N.23, D:N.23, D:I.25, D:F.45, D:D.66, D:D.66, D:V.67, D:N.93, D:G.95, D:Y.158, D:K.162, D:T.191, D:T.191, D:T.193, D:A.194 Water bridges: D:G.26, D:N.46, D:N.46, D:N.93

1 x CAA: ACETOACETYL-COENZYME A(Non-covalent)

CAA.3: 16 residues within 4Å: Chain B: T.97, D.99, K.104, S.145, T.147, N.152, V.153, G.154, Q.155, Y.158, F.190, M.195, V.196, K.206 Chain D: R.178 Ligands: NAI.2 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:F.190 Hydrogen bonds: B:D.99, B:D.99, B:S.145, B:N.152, B:N.152, B:Q.155, B:Y.158, B:K.206, B:K.206, D:R.178, D:R.178 Water bridges: B:V.153 Salt bridges: B:K.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Javidpour, P. et al., Biochemical and Structural Studies of NADH-Dependent FabG Used To Increase the Bacterial Production of Fatty Acids under Anaerobic Conditions. Appl.Environ.Microbiol. (2014)

Release Date

2013-12-04

Peptides

3-oxoacyl-(Acyl-carrier-protein) reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-oxoacyl-(Acyl-carrier-protein) reductase