SMTL ID : 4nbw.1

Crystal structure of FabG from Plesiocystis pacifica

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 31 residues within 4Å: Chain A: G.12, A.14, N.15, G.16, I.17, G.18, D.36, L.37, A.38, V.61, D.62, V.63, S.64, N.89, A.90, G.91, I.92, V.121, N.122, A.148, S.149, S.150, V.151, Y.163, K.167, P.193, G.194, F.195, I.196, T.198, V.201 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.15, A:N.15, A:I.17, A:L.37, A:D.62, A:V.63, A:A.90, A:G.91, A:Y.163, A:K.167, A:I.196, A:T.198, A:T.198 Water bridges: A:G.18, A:N.89 NAD.2: 32 residues within 4Å: Chain B: G.12, A.14, N.15, G.16, I.17, G.18, D.36, L.37, A.38, V.61, D.62, V.63, S.64, N.89, A.90, G.91, I.92, V.121, N.122, A.148, S.149, S.150, V.151, Y.163, K.167, P.193, G.194, F.195, I.196, T.198, M.200, V.201 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:P.193 Hydrogen bonds: B:N.15, B:N.15, B:I.17, B:D.36, B:L.37, B:D.62, B:V.63, B:G.91, B:S.149, B:I.196, B:T.198, B:T.198 Water bridges: B:G.18 NAD.3: 29 residues within 4Å: Chain C: G.12, A.14, N.15, G.16, I.17, G.18, D.36, L.37, A.38, V.61, D.62, V.63, S.64, N.89, A.90, G.91, I.92, V.121, A.148, S.149, S.150, V.151, Y.163, K.167, P.193, G.194, I.196, T.198, V.201 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:P.193 Hydrogen bonds: C:A.14, C:N.15, C:N.15, C:I.17, C:L.37, C:V.63, C:N.89, C:G.91, C:Y.163, C:Y.163, C:K.167, C:I.196, C:T.198, C:T.198 Water bridges: C:N.89 NAD.4: 31 residues within 4Å: Chain D: G.12, A.14, N.15, G.16, I.17, G.18, W.35, D.36, L.37, A.38, V.61, D.62, V.63, S.64, N.89, A.90, G.91, I.92, V.121, A.148, S.149, S.150, V.151, Y.163, K.167, P.193, G.194, F.195, I.196, T.198, V.201 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:P.193 Hydrogen bonds: D:N.15, D:I.17, D:L.37, D:D.62, D:D.62, D:V.63, D:G.91, D:S.149, D:K.167, D:I.196, D:T.198, D:T.198 Water bridges: D:N.15, D:G.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Javidpour, P. et al., Biochemical and Structural Studies of NADH-Dependent FabG Used To Increase the Bacterial Production of Fatty Acids under Anaerobic Conditions. Appl.Environ.Microbiol. (2014)

Release Date

2013-12-04

Peptides

Short-chain dehydrogenase/reductase SDR: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Short-chain dehydrogenase/reductase SDR