SMTL ID : 4ncj.1 (3 other biounits)

Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation with ADP Beryllium Flouride

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: R.12, S.13, Q.31, N.32, G.33, S.34, G.35, K.36, S.37, S.38, E.60, F.61, T.62, K.63, V.64, L.328 Ligands: BEF.2, MG.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:R.12, A:S.13, A:G.33, A:G.33, A:S.34, A:S.34, A:G.35, A:K.36, A:S.37, A:S.38, A:S.38, A:T.62, A:V.64 Water bridges: A:R.12, A:S.37, A:S.37, A:Q.140, A:Q.140 Salt bridges: A:R.12, A:K.36

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 8 residues within 4Å: Chain A: N.32, G.33, K.36, S.37, Q.140, H.312 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: S.37, Q.140 Ligands: ADP.1, BEF.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.37, H2O.2, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deshpande, R.A. et al., ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling. Embo J. (2014)

Release Date

2014-03-05

Peptides

DNA double-strand break repair Rad50 ATPase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA double-strand break repair Rad50 ATPase

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