SMTL ID : 4ncl.1 (1 other biounit)

Crystal structure of eukaryotic translation initiation factor eIF5B (517-970) from Chaetomium thermophilum in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: H.18, V.19, D.20, T.21, G.22, K.23, T.24, K.25, N.135, K.136, D.138, R.139, S.203, A.204, H.205 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:H.18, A:D.20, A:T.21, A:G.22, A:K.23, A:T.24, A:T.24, A:T.24, A:K.25, A:N.135, A:K.136, A:K.136, A:S.203, A:A.204, A:H.205 Salt bridges: A:K.23, A:D.138 pi-Cation interactions: A:K.136

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: K.23, T.24 Ligands: GDP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.24, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhle, B. et al., eIF5B employs a novel domain release mechanism to catalyze ribosomal subunit joining. Embo J. (2014)

Release Date

2014-07-09

Peptides

Eukaryotic translation initiation factor 5B-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Eukaryotic translation initiation factor 5B-like protein

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