- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 4 residues within 4Å:- Chain A: R.210, E.242, H.262, I.266
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.242
- Salt bridges: A:R.210, A:H.262
PO4.29: 4 residues within 4Å:- Chain C: R.210, E.242, H.262, I.266
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.242
- Salt bridges: C:R.210, C:H.262
PO4.56: 4 residues within 4Å:- Chain E: R.210, E.242, H.262, I.266
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:E.242
- Salt bridges: E:R.210, E:H.262
- 6 x 8M0: bis(mu4-oxo)-tetrakis(mu3-oxo)-hexakis(mu2-oxo)-hexadecaoxo-octamolybdenum (VI)(Non-covalent)
8M0.3: 21 residues within 4Å:- Chain A: V.126, G.127, G.128, A.129, G.130, F.146, S.147, M.149, P.150, P.151, L.176, F.180
- Chain B: Y.155, H.156, H.157, H.158
- Ligands: MO.6, MO.8, MO.9, MO.18, 8M0.22
12 PLIP interactions:7 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:G.128, A:A.129, A:G.130, A:S.147, A:P.150, B:H.156, B:H.157, B:H.157, B:H.158, B:H.158
- Water bridges: A:S.147, A:S.147
8M0.22: 16 residues within 4Å:- Chain B: P.103, A.106, S.107, G.110, Q.111, H.114, Y.127, E.129, H.130, P.131, S.150, F.152, P.153, P.154, H.156
- Ligands: 8M0.3
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:A.106, B:Q.111, B:Y.127, B:H.130, B:H.130, B:H.130, B:S.150
- Water bridges: B:P.103, B:S.107
8M0.30: 21 residues within 4Å:- Chain C: V.126, G.127, G.128, A.129, G.130, F.146, S.147, M.149, P.150, P.151, L.176, F.180
- Chain D: Y.155, H.156, H.157, H.158
- Ligands: MO.33, MO.35, MO.36, MO.45, 8M0.49
12 PLIP interactions:5 interactions with chain D, 7 interactions with chain C- Hydrogen bonds: D:H.156, D:H.157, D:H.157, D:H.158, D:H.158, C:G.128, C:A.129, C:G.130, C:S.147, C:P.150
- Water bridges: C:S.147, C:S.147
8M0.49: 16 residues within 4Å:- Chain D: P.103, A.106, S.107, G.110, Q.111, H.114, Y.127, E.129, H.130, P.131, S.150, F.152, P.153, P.154, H.156
- Ligands: 8M0.30
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:A.106, D:Q.111, D:Y.127, D:H.130, D:H.130, D:H.130, D:S.150
- Water bridges: D:P.103, D:S.107
8M0.57: 21 residues within 4Å:- Chain E: V.126, G.127, G.128, A.129, G.130, F.146, S.147, M.149, P.150, P.151, L.176, F.180
- Chain F: Y.155, H.156, H.157, H.158
- Ligands: MO.60, MO.62, MO.63, MO.72, 8M0.76
12 PLIP interactions:5 interactions with chain F, 7 interactions with chain E- Hydrogen bonds: F:H.156, F:H.157, F:H.157, F:H.158, F:H.158, E:G.128, E:A.129, E:G.130, E:S.147, E:P.150
- Water bridges: E:S.147, E:S.147
8M0.76: 16 residues within 4Å:- Chain F: P.103, A.106, S.107, G.110, Q.111, H.114, Y.127, E.129, H.130, P.131, S.150, F.152, P.153, P.154, H.156
- Ligands: 8M0.57
9 PLIP interactions:9 interactions with chain F- Hydrogen bonds: F:A.106, F:Q.111, F:Y.127, F:H.130, F:H.130, F:H.130, F:S.150
- Water bridges: F:P.103, F:S.107
- 60 x MO: MOLYBDENUM ATOM(Non-functional Binders)(Non-covalent)
MO.4: 3 residues within 4Å:- Ligands: MO.5, MO.8, MO.9
Ligand excluded by PLIPMO.5: 3 residues within 4Å:- Ligands: MO.4, MO.6, MO.9
Ligand excluded by PLIPMO.6: 4 residues within 4Å:- Ligands: 8M0.3, MO.5, MO.7, MO.9
Ligand excluded by PLIPMO.7: 3 residues within 4Å:- Ligands: MO.6, MO.8, MO.9
Ligand excluded by PLIPMO.8: 4 residues within 4Å:- Ligands: 8M0.3, MO.4, MO.7, MO.9
Ligand excluded by PLIPMO.9: 6 residues within 4Å:- Ligands: 8M0.3, MO.4, MO.5, MO.6, MO.7, MO.8
Ligand excluded by PLIPMO.10: 3 residues within 4Å:- Ligands: MO.11, MO.12, MO.38
Ligand excluded by PLIPMO.11: 4 residues within 4Å:- Ligands: MO.10, MO.38, MO.64, MO.65
Ligand excluded by PLIPMO.12: 6 residues within 4Å:- Chain A: V.126
- Ligands: MO.10, MO.13, MO.41, MO.67, MO.68
Ligand excluded by PLIPMO.13: 5 residues within 4Å:- Ligands: MO.12, MO.14, MO.39, MO.41, MO.68
Ligand excluded by PLIPMO.14: 7 residues within 4Å:- Ligands: MO.13, MO.39, MO.40, MO.41, MO.66, MO.67, MO.68
Ligand excluded by PLIPMO.15: 5 residues within 4Å:- Chain D: H.157
- Ligands: MO.16, MO.17, MO.45, MO.46
Ligand excluded by PLIPMO.16: 4 residues within 4Å:- Chain A: A.112
- Ligands: MO.15, MO.17, MO.45
Ligand excluded by PLIPMO.17: 4 residues within 4Å:- Ligands: MO.15, MO.16, MO.45, MO.46
Ligand excluded by PLIPMO.18: 5 residues within 4Å:- Ligands: 8M0.3, MO.19, MO.69, MO.70, MO.71
Ligand excluded by PLIPMO.19: 3 residues within 4Å:- Ligands: MO.18, MO.69, MO.71
Ligand excluded by PLIPMO.24: 6 residues within 4Å:- Ligands: MO.25, MO.26, MO.52, MO.53, MO.54, MO.81
Ligand excluded by PLIPMO.25: 9 residues within 4Å:- Ligands: MO.24, MO.26, MO.27, MO.52, MO.53, MO.54, MO.78, MO.79, MO.81
Ligand excluded by PLIPMO.26: 6 residues within 4Å:- Ligands: MO.24, MO.25, MO.54, MO.78, MO.79, MO.81
Ligand excluded by PLIPMO.27: 9 residues within 4Å:- Ligands: MO.25, MO.51, MO.52, MO.53, MO.54, MO.78, MO.79, MO.80, MO.81
Ligand excluded by PLIPMO.31: 3 residues within 4Å:- Ligands: MO.32, MO.35, MO.36
Ligand excluded by PLIPMO.32: 3 residues within 4Å:- Ligands: MO.31, MO.33, MO.36
Ligand excluded by PLIPMO.33: 4 residues within 4Å:- Ligands: 8M0.30, MO.32, MO.34, MO.36
Ligand excluded by PLIPMO.34: 3 residues within 4Å:- Ligands: MO.33, MO.35, MO.36
Ligand excluded by PLIPMO.35: 4 residues within 4Å:- Ligands: 8M0.30, MO.31, MO.34, MO.36
Ligand excluded by PLIPMO.36: 6 residues within 4Å:- Ligands: 8M0.30, MO.31, MO.32, MO.33, MO.34, MO.35
Ligand excluded by PLIPMO.37: 3 residues within 4Å:- Ligands: MO.38, MO.39, MO.65
Ligand excluded by PLIPMO.38: 4 residues within 4Å:- Ligands: MO.10, MO.11, MO.37, MO.65
Ligand excluded by PLIPMO.39: 6 residues within 4Å:- Chain C: V.126
- Ligands: MO.13, MO.14, MO.37, MO.40, MO.68
Ligand excluded by PLIPMO.40: 5 residues within 4Å:- Ligands: MO.14, MO.39, MO.41, MO.66, MO.68
Ligand excluded by PLIPMO.41: 7 residues within 4Å:- Ligands: MO.12, MO.13, MO.14, MO.40, MO.66, MO.67, MO.68
Ligand excluded by PLIPMO.42: 5 residues within 4Å:- Chain F: H.157
- Ligands: MO.43, MO.44, MO.72, MO.73
Ligand excluded by PLIPMO.43: 4 residues within 4Å:- Chain C: A.112
- Ligands: MO.42, MO.44, MO.72
Ligand excluded by PLIPMO.44: 4 residues within 4Å:- Ligands: MO.42, MO.43, MO.72, MO.73
Ligand excluded by PLIPMO.45: 5 residues within 4Å:- Ligands: MO.15, MO.16, MO.17, 8M0.30, MO.46
Ligand excluded by PLIPMO.46: 3 residues within 4Å:- Ligands: MO.15, MO.17, MO.45
Ligand excluded by PLIPMO.51: 6 residues within 4Å:- Ligands: MO.27, MO.52, MO.53, MO.79, MO.80, MO.81
Ligand excluded by PLIPMO.52: 9 residues within 4Å:- Ligands: MO.24, MO.25, MO.27, MO.51, MO.53, MO.54, MO.79, MO.80, MO.81
Ligand excluded by PLIPMO.53: 6 residues within 4Å:- Ligands: MO.24, MO.25, MO.27, MO.51, MO.52, MO.81
Ligand excluded by PLIPMO.54: 9 residues within 4Å:- Ligands: MO.24, MO.25, MO.26, MO.27, MO.52, MO.78, MO.79, MO.80, MO.81
Ligand excluded by PLIPMO.58: 3 residues within 4Å:- Ligands: MO.59, MO.62, MO.63
Ligand excluded by PLIPMO.59: 3 residues within 4Å:- Ligands: MO.58, MO.60, MO.63
Ligand excluded by PLIPMO.60: 4 residues within 4Å:- Ligands: 8M0.57, MO.59, MO.61, MO.63
Ligand excluded by PLIPMO.61: 3 residues within 4Å:- Ligands: MO.60, MO.62, MO.63
Ligand excluded by PLIPMO.62: 4 residues within 4Å:- Ligands: 8M0.57, MO.58, MO.61, MO.63
Ligand excluded by PLIPMO.63: 6 residues within 4Å:- Ligands: 8M0.57, MO.58, MO.59, MO.60, MO.61, MO.62
Ligand excluded by PLIPMO.64: 3 residues within 4Å:- Ligands: MO.11, MO.65, MO.66
Ligand excluded by PLIPMO.65: 4 residues within 4Å:- Ligands: MO.11, MO.37, MO.38, MO.64
Ligand excluded by PLIPMO.66: 6 residues within 4Å:- Chain E: V.126
- Ligands: MO.14, MO.40, MO.41, MO.64, MO.67
Ligand excluded by PLIPMO.67: 5 residues within 4Å:- Ligands: MO.12, MO.14, MO.41, MO.66, MO.68
Ligand excluded by PLIPMO.68: 7 residues within 4Å:- Ligands: MO.12, MO.13, MO.14, MO.39, MO.40, MO.41, MO.67
Ligand excluded by PLIPMO.69: 5 residues within 4Å:- Chain B: H.157
- Ligands: MO.18, MO.19, MO.70, MO.71
Ligand excluded by PLIPMO.70: 4 residues within 4Å:- Chain E: A.112
- Ligands: MO.18, MO.69, MO.71
Ligand excluded by PLIPMO.71: 4 residues within 4Å:- Ligands: MO.18, MO.19, MO.69, MO.70
Ligand excluded by PLIPMO.72: 5 residues within 4Å:- Ligands: MO.42, MO.43, MO.44, 8M0.57, MO.73
Ligand excluded by PLIPMO.73: 3 residues within 4Å:- Ligands: MO.42, MO.44, MO.72
Ligand excluded by PLIPMO.78: 6 residues within 4Å:- Ligands: MO.25, MO.26, MO.27, MO.54, MO.79, MO.80
Ligand excluded by PLIPMO.79: 9 residues within 4Å:- Ligands: MO.25, MO.26, MO.27, MO.51, MO.52, MO.54, MO.78, MO.80, MO.81
Ligand excluded by PLIPMO.80: 6 residues within 4Å:- Ligands: MO.27, MO.51, MO.52, MO.54, MO.78, MO.79
Ligand excluded by PLIPMO.81: 9 residues within 4Å:- Ligands: MO.24, MO.25, MO.26, MO.27, MO.51, MO.52, MO.53, MO.54, MO.79
Ligand excluded by PLIP- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.21: 4 residues within 4Å:- Chain B: D.171, E.190, P.227
- Ligands: ATP.20
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.190, B:P.227, H2O.8, H2O.9
MG.48: 4 residues within 4Å:- Chain D: D.171, E.190, P.227
- Ligands: ATP.47
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.190, D:P.227, H2O.22, H2O.22
MG.75: 4 residues within 4Å:- Chain F: D.171, E.190, P.227
- Ligands: ATP.74
4 PLIP interactions:2 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:E.190, F:P.227, H2O.36, H2O.36
- 3 x M10: (mu3-oxo)-tris(mu2-oxo)-nonakisoxo-trimolybdenum (VI)(Non-covalent)
M10.23: 9 residues within 4Å:- Chain B: T.132, Q.136, H.140
- Chain D: H.140
- Chain F: Q.136, I.139, H.140
- Ligands: M10.50, M10.77
4 PLIP interactions:3 interactions with chain F, 1 interactions with chain B- Hydrogen bonds: F:Q.136, F:Q.136, F:H.140
- Water bridges: B:Q.136
M10.50: 9 residues within 4Å:- Chain B: Q.136, I.139, H.140
- Chain D: T.132, Q.136, H.140
- Chain F: H.140
- Ligands: M10.23, M10.77
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain D- Hydrogen bonds: B:Q.136, B:Q.136, B:H.140
- Water bridges: D:Q.136
M10.77: 9 residues within 4Å:- Chain B: H.140
- Chain D: Q.136, I.139, H.140
- Chain F: T.132, Q.136, H.140
- Ligands: M10.23, M10.50
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:Q.136, D:Q.136, D:H.140
- Water bridges: F:Q.136
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Poppe, J. et al., Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein. J.Inorg.Biochem. (2014)
- Release Date
- 2014-08-13
- Peptides
- Molybdenum storage protein subunit beta: ACE
Molybdenum storage protein subunit alpha: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BC
BE
BB
AD
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x 8M0: bis(mu4-oxo)-tetrakis(mu3-oxo)-hexakis(mu2-oxo)-hexadecaoxo-octamolybdenum (VI)(Non-covalent)
- 60 x MO: MOLYBDENUM ATOM(Non-functional Binders)(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 3 x M10: (mu3-oxo)-tris(mu2-oxo)-nonakisoxo-trimolybdenum (VI)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Poppe, J. et al., Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein. J.Inorg.Biochem. (2014)
- Release Date
- 2014-08-13
- Peptides
- Molybdenum storage protein subunit beta: ACE
Molybdenum storage protein subunit alpha: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BC
BE
BB
AD
AF
A