SMTL ID : 4nhm.1

Crystal structure of Tpa1p from Saccharomyces cerevisiae, termination and polyadenylation protein 1, in complex with N-[(1-chloro-4-hydroxyisoquinolin-3-yl)carbonyl]glycine (IOX3/UN9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x UN9: N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE(Non-covalent)

UN9.1: 17 residues within 4Å: Chain A: Q.95, S.149, N.151, Y.153, L.159, H.162, D.164, I.174, Y.176, L.192, H.230, V.232, R.241, Q.245, W.247 Ligands: MN.2, GOL.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.159, A:Q.245 Hydrogen bonds: A:Y.176 Water bridges: A:S.243 Salt bridges: A:R.241

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.162, D.164, H.230 Ligands: UN9.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.162, A:D.164, A:H.230, H2O.21

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: I.90, Y.91, L.159, H.162 Ligands: UN9.1 No protein-ligand interaction detected (PLIP) GOL.4: 8 residues within 4Å: Chain A: F.522, N.523, L.526, K.527, I.532, I.533, D.534, D.634 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.292, A:N.523, A:N.523, A:D.534, A:D.634

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horita, S. et al., Structure of the Ribosomal Oxygenase OGFOD1 Provides Insights into the Regio- and Stereoselectivity of Prolyl Hydroxylases. Structure (2015)

Release Date

2014-11-19

Peptides

PKHD-type hydroxylase TPA1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PKHD-type hydroxylase TPA1

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