SMTL ID : 4nho.1

Structure of the spliceosomal DEAD-box protein Prp28

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: T.105, G.106, S.107, G.108, K.109, T.110 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.106, A:S.107, A:G.108, A:K.109, A:T.110 Water bridges: A:T.110, A:A.111 SO4.2: 5 residues within 4Å: Chain A: T.193, P.194, G.195, R.196, F.227 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.193, A:G.195, A:R.196 SO4.3: 2 residues within 4Å: Chain A: P.125, K.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.126 Water bridges: A:I.127 Salt bridges: A:K.126 SO4.4: 3 residues within 4Å: Chain A: G.52, K.53, K.428 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.53 Water bridges: A:G.51, A:I.54, A:K.428 Salt bridges: A:K.53, A:K.428 SO4.5: 3 residues within 4Å: Chain A: K.50, E.282, V.294 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.50, A:K.50, A:E.282, A:P.455 Salt bridges: A:K.50

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: Q.232, L.235, E.236, L.284, S.287, Y.288 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.287 Water bridges: A:Q.232 GOL.7: 4 residues within 4Å: Chain A: E.446, Q.449, A.450, E.453 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.446

1 x CXS: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID(Non-covalent)

CXS.8: 4 residues within 4Å: Chain A: H.24, S.26, D.44, Y.45 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.44

1 x HG: MERCURY (II) ION(Non-covalent)

HG.9: 6 residues within 4Å: Chain A: I.140, L.208, C.211, Y.213, V.214, M.238 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mohlmann, S. et al., Structural and functional analysis of the human spliceosomal DEAD-box helicase Prp28. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-06-18

Peptides

Probable ATP-dependent RNA helicase DDX23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable ATP-dependent RNA helicase DDX23