- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
SAM.2: 23 residues within 4Å:- Chain A: E.35, F.68, C.69, D.70, T.71, T.110, G.111, G.112, E.113, E.136, T.137, N.138, S.153, K.155, K.169, V.171, Q.193, P.194, M.195, D.196, Q.222
- Ligands: SF4.1, 2K8.3
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:E.136
- Hydrogen bonds: A:D.70, A:E.113, A:E.136, A:S.153, A:K.155, A:K.155, A:K.169, A:Q.193, A:D.196, A:D.196
- Water bridges: A:T.137, A:T.137, A:Q.222
- Salt bridges: A:K.155
- pi-Stacking: A:F.68
- pi-Cation interactions: A:K.225
SAM.7: 23 residues within 4Å:- Chain B: E.35, F.68, C.69, D.70, T.71, T.110, G.111, G.112, E.113, E.136, T.137, N.138, S.153, K.155, K.169, V.171, Q.193, P.194, M.195, D.196, Q.222
- Ligands: SF4.6, 2K8.8
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:E.136
- Hydrogen bonds: B:D.70, B:E.113, B:E.113, B:E.136, B:E.136, B:S.153, B:K.155, B:K.169, B:Q.193, B:D.196, B:D.196
- Water bridges: B:T.137, B:C.151, B:V.171, B:Q.222
- Salt bridges: B:K.155
- pi-Stacking: B:F.68
- pi-Cation interactions: B:K.225
- 2 x 2K8: (6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridine-6-carboxylic acid(Non-covalent)
2K8.3: 13 residues within 4Å:- Chain A: T.31, L.32, Q.33, G.34, E.35, F.45, R.47, T.110, E.136, H.224, P.230
- Ligands: SAM.2, MG.4
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:T.31, A:Q.33, A:G.34, A:E.35, A:R.47, A:H.224, A:P.230, A:P.230
- Water bridges: A:E.35, A:Q.222, A:Q.222
- Salt bridges: A:R.47
- pi-Stacking: A:H.224
- pi-Cation interactions: A:H.224
2K8.8: 13 residues within 4Å:- Chain B: T.31, L.32, Q.33, G.34, E.35, F.45, R.47, T.110, E.136, H.224, P.230
- Ligands: SAM.7, MG.9
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:G.34, B:R.47, B:T.110, B:P.230, B:P.230
- Water bridges: B:E.35, B:T.71, B:T.71, B:Q.222, B:P.230, B:P.230
- Salt bridges: B:R.47
- pi-Stacking: B:H.224
- pi-Cation interactions: B:H.224
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain A: R.47, D.70, T.71
- Ligands: 2K8.3
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.71, H2O.1, H2O.1
MG.9: 4 residues within 4Å:- Chain B: R.47, D.70, T.71
- Ligands: 2K8.8
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:T.71, H2O.7, H2O.7
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dowling, D.P. et al., Radical SAM enzyme QueE defines a new minimal core fold and metal-dependent mechanism. Nat.Chem.Biol. (2014)
- Release Date
- 2013-12-25
- Peptides
- 7-carboxy-7-deazaguanine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 2 x 2K8: (6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridine-6-carboxylic acid(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dowling, D.P. et al., Radical SAM enzyme QueE defines a new minimal core fold and metal-dependent mechanism. Nat.Chem.Biol. (2014)
- Release Date
- 2013-12-25
- Peptides
- 7-carboxy-7-deazaguanine synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B