SMTL ID : 4njm.1

Crystal Structure of phosphoglycerate bound 3-phosphoglycerate dehydrogenase in Entamoeba histolytica

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

2 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)

3PG.1: 11 residues within 4Å: Chain A: K.11, R.57, S.58, R.77, G.79, A.80, G.81, N.104, R.219, K.265, A.268 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.58, A:R.77, A:A.78, A:A.80, A:G.81, A:N.104, A:R.219, A:R.219 Water bridges: A:K.11, A:R.57, A:S.58, A:A.218, A:A.268, A:E.269 Salt bridges: A:K.11, A:R.57, A:R.77, A:R.77, A:R.219, A:K.265, A:K.265 3PG.2: 11 residues within 4Å: Chain B: K.11, R.57, S.58, R.77, G.79, A.80, G.81, N.104, R.219, K.265, A.268 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:S.58, B:A.78, B:A.80, B:G.81, B:N.104, B:R.219, B:R.219 Water bridges: B:K.11, B:K.11, B:R.57, B:A.218, B:A.268 Salt bridges: B:K.11, B:R.57, B:R.77, B:R.77, B:R.219, B:K.265, B:K.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, R.K. et al., Crystal structures and kinetics of Type III 3-phosphoglycerate dehydrogenase reveal catalysis by lysine. Febs J. (2014)

Release Date

2014-10-08

Peptides

D-3-phosphoglycerate dehydrogenase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-3-phosphoglycerate dehydrogenase, putative

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