SMTL ID : 4nlg.1

Y-family DNA polymerase chimera Dbh-Dpo4(243-245)-Dbh

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.7, D.105, E.106 Chain B: G.13 Ligands: CA.2, DCP.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.7, A:D.7, A:D.105, H2O.1 CA.2: 5 residues within 4Å: Chain A: D.7, F.8, D.105 Ligands: CA.1, DCP.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.7, A:F.8, A:D.105

1 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

DCP.3: 16 residues within 4Å: Chain A: D.7, F.8, D.9, Y.10, F.11, F.12, A.44, T.45, Y.48, R.51, D.105, K.160 Chain B: G.13 Chain C: G.5 Ligands: CA.1, CA.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.12 Hydrogen bonds: A:D.7, A:Y.10, A:F.11, A:F.12, A:T.45, A:Y.48, A:D.105 Water bridges: A:K.160, A:K.160 Salt bridges: A:R.51, A:R.51, A:K.160, A:K.160, A:K.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mukherjee, P. et al., Three Residues of the Interdomain Linker Determine the Conformation and Single-base Deletion Fidelity of Y-family Translesion Polymerases. J.Biol.Chem. (2014)

Release Date

2014-01-22

Peptides

DNA polymerase IV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase IV