SMTL ID : 4nls.1

Poliovirus Polymerase - S288A Loop Mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 6 residues within 4Å: Chain A: S.28, I.401, W.403, T.404, T.410, H.413 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.404 Salt bridges: A:H.413 ACY.2: 1 residues within 4Å: Chain A: T.52 No protein-ligand interaction detected (PLIP) ACY.3: 2 residues within 4Å: Chain A: P.440, R.443 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.443 ACY.4: 2 residues within 4Å: Chain A: F.377, R.379 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.377 Salt bridges: A:R.379 ACY.5: 2 residues within 4Å: Chain A: M.189, Y.264 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.264

3 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.6: 4 residues within 4Å: Chain A: S.219, K.220, F.386, F.461 No protein-ligand interaction detected (PLIP) 1PE.7: 2 residues within 4Å: Chain A: W.368, F.378 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.380 1PE.8: 6 residues within 4Å: Chain A: H.31, Y.32, F.34, E.35, G.36, R.402 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.35, A:E.35, A:G.36

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 5 residues within 4Å: Chain A: L.268, N.269, S.271, G.284, G.285 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.271 Water bridges: A:S.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sholders, A.J. et al., Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol. (2014)

Release Date

2014-01-22

Peptides

RNA-directed RNA polymerase 3D-POL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase 3D-POL