SMTL ID : 4nm8.1

Crystal structure of broadly neutralizing antibody CR8043 bound to H3 influenza hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.32, T.312 Chain B: L.52 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.52 NAG-NAG.2: 5 residues within 4Å: Chain A: N.159, T.161 Chain C: T.181, S.213, W.216 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.161 NAG-NAG.3: 4 residues within 4Å: Chain A: N.279, N.290, V.291, N.292 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain C: Q.74, N.75, F.114, I.115 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain C: N.279, N.290, V.291, N.292 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain E: N.279, N.290, V.291, N.292 No protein-ligand interaction detected (PLIP)

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain B: E.150, N.154, T.156 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:T.156 Hydrogen bonds: B:E.150, B:T.156 NAG.8: 3 residues within 4Å: Chain C: N.32, T.312 Chain D: L.52 No protein-ligand interaction detected (PLIP) NAG.9: 3 residues within 4Å: Chain C: N.159, T.161 Chain E: S.213 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:N.159, E:S.213, E:S.213 NAG.10: 5 residues within 4Å: Chain D: A.147, E.150, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:T.156 Hydrogen bonds: D:T.156 NAG.11: 3 residues within 4Å: Chain E: N.32, T.312 Chain F: L.52 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:N.49, E:T.312 NAG.12: 6 residues within 4Å: Chain E: Q.74, N.75, E.113, F.114, I.115, R.144 No protein-ligand interaction detected (PLIP) NAG.13: 4 residues within 4Å: Chain A: T.181, S.213 Chain E: N.159, T.161 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain E Hydrophobic interactions: A:T.181 Hydrogen bonds: A:S.213, A:S.213, E:N.159 NAG.14: 3 residues within 4Å: Chain F: E.150, N.154, T.156 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:T.156 Hydrogen bonds: F:T.156, F:T.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Friesen, R.H. et al., A common solution to group 2 influenza virus neutralization. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2013-12-25

Peptides

Hemagglutinin HA1 Chain: ACE
Hemagglutinin HA2 Chain: BDF
Antibody CR8043, Light Chain: GIK
Antibody CR8043, Heavy Chain: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
L

I
M

K
N

H
H

J
I

L
J

Hemagglutinin HA1 Chain

Hemagglutinin HA2 Chain

Antibody CR8043, Light Chain

Antibody CR8043, Heavy Chain

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