SMTL ID : 4nmh.1 (1 other biounit)

11-beta-HSD1 in complex with a 3,3-Di-methyl-azetidin-2-one

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x 2KG: (4S)-4-(2-methoxyphenyl)-3,3-dimethyl-1-[3-(methylsulfonyl)phenyl]azetidin-2-one(Non-covalent)

2KG.1: 17 residues within 4Å: Chain A: I.125, T.128, S.174, L.175, A.176, Y.181, V.184, Y.187, L.219, G.220, L.221, I.231, I.235, A.237 Chain B: Y.287, Y.288 Ligands: NDP.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.175, A:A.176, A:Y.181, A:Y.181, A:V.184, A:L.221, A:I.231, A:I.235 Hydrogen bonds: A:S.174 2KG.4: 16 residues within 4Å: Chain A: Y.287, Y.288 Chain B: I.125, T.128, S.174, Y.181, Y.187, L.219, G.220, L.221, T.226, A.227, I.231, I.235, A.237 Ligands: NDP.5 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.181, B:Y.181, B:Y.181, B:A.227, B:I.231, B:I.235 Hydrogen bonds: B:S.174

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.2: 26 residues within 4Å: Chain A: G.45, S.47, K.48, G.49, I.50, A.69, R.70, S.71, T.96, M.97, N.123, H.124, I.125, I.172, S.173, S.174, Y.187, K.191, L.219, G.220, L.221, I.222, T.224, T.226, A.227 Ligands: 2KG.1 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.219 Hydrogen bonds: A:S.47, A:S.47, A:K.48, A:K.48, A:I.50, A:R.70, A:S.71, A:T.96, A:M.97, A:N.123, A:I.125, A:Y.187, A:K.191, A:I.222, A:T.224, A:T.224, A:T.226, A:T.226 Salt bridges: A:K.48, A:R.70 NDP.5: 29 residues within 4Å: Chain B: G.45, A.46, S.47, K.48, G.49, I.50, A.69, R.70, S.71, G.95, T.96, M.97, N.123, H.124, I.125, I.172, S.173, S.174, Y.187, K.191, L.219, G.220, L.221, I.222, T.224, T.226, A.227 Ligands: 2KG.4, SO4.7 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:L.219 Hydrogen bonds: B:S.47, B:S.47, B:S.47, B:K.48, B:K.48, B:I.50, B:R.70, B:S.71, B:T.96, B:M.97, B:N.123, B:I.125, B:Y.187, B:K.191, B:I.222, B:T.224, B:T.226 Salt bridges: B:K.48, B:R.70

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: K.48, G.49, R.52, T.224, E.225, K.242 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.49, A:E.225 Salt bridges: A:R.52, A:K.242 SO4.6: 6 residues within 4Å: Chain B: K.48, G.49, R.52, T.224, E.225, K.242 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.49, B:E.225, B:E.225 Salt bridges: B:R.52, B:K.242 SO4.7: 4 residues within 4Å: Chain B: R.70, T.126, Q.127 Ligands: NDP.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.126, B:Q.127 Salt bridges: B:R.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCoull, W. et al., Identification and optimisation of 3,3-dimethyl-azetidin-2-ones as potent and selective inhibitors of 11 beta-hydroxysteroid dehydrogenase type 1 (11-beta-HSD1). TO BE PUBLISHED

Release Date

2014-03-26

Peptides

Corticosteroid 11-beta-dehydrogenase isozyme 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Corticosteroid 11-beta-dehydrogenase isozyme 1

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