SMTL ID : 4nob.1

Crystal structure of the 1st Ig domain from mouse Polymeric Immunoglobulin receptor [PSI-NYSGRC-006220]

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: Y.27, F.73, E.75, N.76 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.27 Hydrogen bonds: A:N.76, A:T.78

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: E.112 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.112, H2O.2, H2O.3, H2O.3, H2O.3

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: Y.27, N.76 Ligands: NAG.1 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain A: R.43, L.53, E.63, R.67, D.89, D.90 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.43 Water bridges: A:R.67, A:D.90, A:Y.94 EDO.5: 5 residues within 4Å: Chain A: P.11, V.14, V.22, S.23, I.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.23 Water bridges: A:S.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, P.R. et al., Crystal structure of the 1st Ig domain from mouse Polymeric Immunoglobulin receptor. to be published

Release Date

2013-12-04

Peptides

Polymeric immunoglobulin receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polymeric immunoglobulin receptor