SMTL ID : 4npo.1

Crystal structure of protein with unknown function from Deinococcus radiodurans at P61 spacegroup

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: Y.62, E.78, H.89, I.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.62 Salt bridges: A:H.89 ACT.2: 6 residues within 4Å: Chain A: L.102, K.103, V.107, T.108, D.109, L.110 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.102, A:V.107, A:L.110 Hydrogen bonds: A:L.110 ACT.4: 7 residues within 4Å: Chain A: M.124 Chain B: L.102, K.103, V.107, T.108, D.109, L.110 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.102, B:K.103, B:V.107, B:L.110 Hydrogen bonds: B:L.110 Salt bridges: B:K.103

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: S.35, E.37, H.38, N.106 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.35, A:E.37, A:E.37, A:H.38, A:N.106 Water bridges: A:S.35, A:A.36

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain B: P.93, G.94, V.95, T.96, Q.97 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.94, B:T.96, B:Q.97, B:Q.97 Water bridges: B:T.96, B:T.96, B:T.96

2 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.6: 3 residues within 4Å: Chain B: G.84, H.87, T.88 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.88 ACE.7: 4 residues within 4Å: Chain B: Y.62, E.78, H.89, I.112 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.112 Hydrogen bonds: B:Y.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyko, K.M. et al., Crystal structure of protein with unknown function at P61 spacegroup. To be Published

Release Date

2013-12-11

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein