SMTL ID : 4nq8.1 (2 other biounits)

Crystal structure of a trap periplasmic solute binding protein from Bordetella bronchispeptica (bb3421), target EFI-510039, with density modeled as pantoate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x PAF: PANTOATE(Non-covalent)

PAF.1: 12 residues within 4Å: Chain A: A.33, L.34, Y.40, E.72, S.90, Q.145, R.148, R.169, T.171, W.192, N.209, V.213 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.192, A:W.192, A:V.213 Hydrogen bonds: A:Y.40, A:S.90, A:Q.145, A:R.148, A:R.148, A:N.209, A:N.209 Salt bridges: A:R.148, A:R.169

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: T.178, R.181, E.307, K.311 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.181 Water bridges: A:T.178, A:T.178, A:K.311, A:K.311, A:K.311 Salt bridges: A:K.311 SO4.3: 1 residues within 4Å: Chain A: K.167 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.167, A:K.167, A:K.167 Salt bridges: A:K.167

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: Q.126, L.129, L.140, A.141 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes. Biochemistry (2015)

Release Date

2014-01-01

Peptides

Putative periplasmic substrate-binding transport protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative periplasmic substrate-binding transport protein

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