SMTL ID : 4nqq.1 (1 other biounit)

Crystal structure of mouse P-cadherin extracellular domains EC1-EC2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

7 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: E.11, N.12, D.67, R.68, E.69, D.103, N.104 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.11, A:D.67, A:E.69, A:D.103, H2O.2 CA.2: 8 residues within 4Å: Chain A: E.11, R.68, E.69, D.100, Q.101, D.103, D.136 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:D.100, A:Q.101, A:D.103, A:D.136 CA.3: 8 residues within 4Å: Chain A: N.102, N.104, K.105, D.134, D.136, N.143, G.144, D.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.104, A:D.134, A:D.136, A:N.143, A:D.195 CA.4: 4 residues within 4Å: Chain A: E.119, R.181, E.182, D.213 No protein-ligand interaction detected (PLIP) CA.7: 8 residues within 4Å: Chain B: E.11, N.12, D.67, R.68, E.69, D.103, N.104 Ligands: CA.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.11, B:D.67, B:E.69, B:D.103 CA.8: 9 residues within 4Å: Chain B: E.11, R.68, E.69, D.100, Q.101, D.103, N.104, D.136 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:E.69, B:E.69, B:D.100, B:D.136 CA.9: 7 residues within 4Å: Chain B: N.102, N.104, D.134, D.136, N.143, G.144, D.195 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.104, B:D.134, B:D.136, B:N.143, B:D.195

4 x CU: COPPER (II) ION(Non-covalent)

CU.5: 2 residues within 4Å: Chain A: P.18, H.63 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.63 CU.6: 1 residues within 4Å: Chain A: H.151 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.151, H2O.1, H2O.1, H2O.1, H2O.1 CU.10: 2 residues within 4Å: Chain B: P.18, H.63 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.63, H2O.3 CU.11: 1 residues within 4Å: Chain B: H.151 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.151, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vendome, J. et al., Structural and energetic determinants of adhesive binding specificity in type I cadherins. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-09-24

Peptides

Cadherin-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cadherin-3

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