SMTL ID : 4nrj.1

Structure of hemagglutinin with F95Y mutation of influenza virus B/Lee/40

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

hetero-3-3-mer

Ligands

12 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: S.12, P.13, V.15, N.25, Y.336 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: N.145, T.147, G.149, N.150 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: E.291, G.301, N.303 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 5 residues within 4Å: Chain A: I.30, N.332 Chain B: W.21, I.45, L.52 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain C: S.12, P.13, V.15, N.25, Y.336 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain C: E.291, G.301, N.303 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 4 residues within 4Å: Chain C: I.30, N.332 Chain D: W.21, I.45 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 5 residues within 4Å: Chain E: S.12, P.13, V.15, N.25, Y.336 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 4 residues within 4Å: Chain E: N.145, T.147, G.149, N.150 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 2 residues within 4Å: Chain E: F.230, N.232 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 3 residues within 4Å: Chain E: E.291, G.301, N.303 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 3 residues within 4Å: Chain E: I.30, N.332 Chain F: W.21 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.6: 5 residues within 4Å: Chain C: N.145, V.146, T.147, G.149, N.150 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.14: 1 residues within 4Å: Chain A: N.232 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.232 NAG.15: 1 residues within 4Å: Chain B: N.145 No protein-ligand interaction detected (PLIP) NAG.16: 1 residues within 4Å: Chain C: N.232 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.232, C:N.232 NAG.17: 2 residues within 4Å: Chain D: N.145, T.147 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.147, D:T.147 NAG.18: 2 residues within 4Å: Chain E: N.59, R.69 2 PLIP interactions: 2 interactions with chain E Water bridges: E:R.69, E:R.69 NAG.19: 2 residues within 4Å: Chain F: N.145, T.147 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:T.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, F. et al., The roles of hemagglutinin Phe-95 in receptor binding and pathogenicity of influenza B virus. Virology (2014)

Release Date

2014-03-12

Peptides

HEMAGGLUTININ HA1 CHAIN: ACE
HEMAGGLUTININ HA2 CHAIN: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

HEMAGGLUTININ HA1 CHAIN

HEMAGGLUTININ HA2 CHAIN

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