SMTL ID : 4nrm.1

Crystal structure of human ALKBH5 in complex with citrate and acetate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

monomer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 12 residues within 4Å: Chain A: K.70, N.131, I.139, H.142, D.144, I.153, S.155, L.194, H.204, I.219, R.221 Ligands: ACT.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.219 Hydrogen bonds: A:N.131, A:S.155, A:H.204 Water bridges: A:K.70, A:K.70, A:K.70, A:R.221, A:R.221, A:R.221 Salt bridges: A:K.70, A:H.142, A:H.142, A:H.204, A:H.204, A:R.221

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: S.155, I.206, R.215, V.217 Ligands: FLC.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.155 Salt bridges: A:R.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, C. et al., Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition. J.Biol.Chem. (2014)

Release Date

2014-03-19

Peptides

RNA demethylase ALKBH5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA demethylase ALKBH5

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