SMTL ID : 4nrp.1

Crystal structure of human ALKBH5 in complex with N-oxalylglycine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.142, D.144, H.204 Ligands: OGA.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.142, A:D.144, A:H.204

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 12 residues within 4Å: Chain A: K.70, N.131, Y.133, I.139, H.142, D.144, H.204, I.206, R.215, V.217, I.219 Ligands: MN.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.131 Water bridges: A:R.221, A:R.221 Salt bridges: A:K.70, A:H.142, A:R.215, A:R.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, C. et al., Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition. J.Biol.Chem. (2014)

Release Date

2014-03-19

Peptides

RNA demethylase ALKBH5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA demethylase ALKBH5

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