SMTL ID : 4nrt.1

Human Norovirus polymerase bound to Compound 6 (suramin derivative)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x 2NG: 4-({4-methyl-3-[(3-nitrobenzoyl)amino]benzoyl}amino)naphthalene-1,5-disulfonic acid(Non-covalent)

2NG.1: 11 residues within 4Å: Chain A: F.29, L.170, Q.415, W.418, T.419, R.420, H.434, Q.436, R.437, Q.440, N.506 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.29, A:Q.415, A:R.420, A:Q.440 Hydrogen bonds: A:T.419, A:R.420, A:Q.436, A:N.506 Water bridges: A:R.420, A:Q.440, A:N.506 Salt bridges: A:R.420, A:H.434, A:R.437

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Croci, R. et al., Structural bases of norovirus RNA dependent RNA polymerase inhibition by novel suramin-related compounds. Plos One (2014)

Release Date

2014-10-15

Peptides

hNV-RdRp: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

hNV-RdRp

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