SMTL ID : 4nru.1 (6 other biounits)

Murine Norovirus RNA-dependent-RNA-polymerase in complex with Compound 6, a suramin derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 2NG: 4-({4-METHYL-3-[(3-NITROBENZOYL)AMINO]BENZOYL}AMINO)NAPHTHALENE-1,5-DISULFONIC ACID(Non-covalent)

2NG.1: 14 residues within 4Å: Chain A: F.29, L.169, M.219, M.221, Y.341, L.391, R.392, R.393, Q.414, W.417, T.418, K.419, R.436, Q.439 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.29, A:L.391, A:Q.414 Hydrogen bonds: A:R.392, A:R.392, A:R.393, A:Q.414, A:T.418, A:K.419, A:K.419, A:Q.439 Salt bridges: A:K.419, A:R.436 pi-Cation interactions: A:R.392, A:K.419

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.240, D.344, E.345, S.389 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.240, A:D.344, A:E.345, A:S.389, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Croci, R. et al., Structural bases of norovirus RNA dependent RNA polymerase inhibition by novel suramin-related compounds. Plos One (2014)

Release Date

2014-10-15

Peptides

RNA dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA dependent RNA polymerase

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