SMTL ID : 4nt6.1

HLA-C*0801 Crystal Structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLY- ILE- LEU- GLY- PHE- VAL- PHE- THR- LEU: Matrix protein 1(Non-covalent)

GLY-ILE-LEU-GLY-PHE-VAL-PHE-THR-LEU.1: 26 residues within 4Å: Chain A: M.5, Y.7, Y.9, E.63, K.66, Y.67, Q.70, T.73, V.76, S.77, N.80, Y.84, L.95, R.97, Y.99, F.116, Y.123, T.143, K.146, W.147, T.152, Q.155, L.156, Y.159, W.167, Y.171 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:Y.7, A:K.66, A:Y.67, A:Y.67, A:V.76, A:L.95, A:F.116, A:Y.123, A:W.147, A:W.147, A:T.152, A:Q.155, A:Q.155, A:L.156, A:Y.159 Hydrogen bonds: A:Y.7, A:E.63, A:S.77, A:N.80, A:Y.99, A:Y.99, A:T.143, A:K.146, A:Y.159, A:Y.171 Water bridges: A:K.66, A:Q.70, A:Q.70, A:R.97, A:K.146, A:T.163 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choo, J.A. et al., The immunodominant influenza A virus M158-66 cytotoxic T lymphocyte epitope exhibits degenerate class I major histocompatibility complex restriction in humans. J.Virol. (2014)

Release Date

2014-07-23

Peptides

HLA class I histocompatibility antigen, Cw-8 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, Cw-8 alpha chain

Beta-2-microglobulin

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