SMTL ID : 4nt9.4 (3 other biounits)

Crystal structure of an L,D-carboxypeptidase DacB from Streptococcus pneumonia

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.134, D.141, E.185, H.188 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.134, A:D.141, A:E.185, A:H.188, H2O.1, H2O.2

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: R.101, Q.106, Y.125, S.126, A.127, S.132, H.134, E.185 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.127 Hydrogen bonds: A:Q.106, A:S.126, A:S.132 Water bridges: A:R.101, A:E.133 Salt bridges: A:R.101, A:H.134

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: A.85, E.88, Y.166 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Y.H. et al., Crystal structure of an L,D-carboxypeptidase DacB from Streptococcus pneumonia. To be Published

Release Date

2014-11-12

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Putative uncharacterized protein

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