SMTL ID : 4nta.1

Mus Musculus LTC4 synthase in apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-trimer

Ligands

12 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 3 residues within 4Å: Chain A: P.138, L.141, R.142 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.141 PLM.2: 4 residues within 4Å: Chain A: L.132, F.136 Chain B: T.16 Ligands: PLM.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.132, A:F.136, A:F.136 PLM.3: 2 residues within 4Å: Chain A: Y.27, Q.101 No protein-ligand interaction detected (PLIP) PLM.4: 6 residues within 4Å: Chain B: T.16, V.20, G.83, L.87, L.90 Ligands: PLM.2 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:T.16, B:V.20, B:L.87 PLM.7: 3 residues within 4Å: Chain B: P.138, L.141, R.142 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.141 PLM.8: 4 residues within 4Å: Chain B: L.132, F.136 Chain C: T.16 Ligands: PLM.10 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.132, B:F.136, B:F.136 PLM.9: 2 residues within 4Å: Chain B: Y.27, Q.101 No protein-ligand interaction detected (PLIP) PLM.10: 6 residues within 4Å: Chain C: T.16, V.20, G.83, L.87, L.90 Ligands: PLM.8 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:T.16, C:V.20, C:L.87 PLM.13: 3 residues within 4Å: Chain C: P.138, L.141, R.142 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.141 PLM.14: 4 residues within 4Å: Chain A: T.16 Chain C: L.132, F.136 Ligands: PLM.16 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.132, C:F.136, C:F.136 PLM.15: 2 residues within 4Å: Chain C: Y.27, Q.101 No protein-ligand interaction detected (PLIP) PLM.16: 6 residues within 4Å: Chain A: T.16, V.20, G.83, L.87, L.90 Ligands: PLM.14 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.16, A:V.20, A:L.87

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 7 residues within 4Å: Chain A: R.57, N.61, Y.99, R.110, L.114 Chain B: I.33, R.36 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.61 Salt bridges: A:R.57, A:R.110, B:R.36 SO4.6: 4 residues within 4Å: Chain A: R.54, S.106, A.107, Q.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.106, A:A.107, A:Q.108 Salt bridges: A:R.54 SO4.11: 7 residues within 4Å: Chain B: R.57, N.61, Y.99, R.110, L.114 Chain C: I.33, R.36 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain B Salt bridges: C:R.36, B:R.57, B:R.110 Hydrogen bonds: B:N.61, B:Y.99 SO4.12: 4 residues within 4Å: Chain B: R.54, S.106, A.107, Q.108 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.106, B:A.107, B:Q.108 Salt bridges: B:R.54 SO4.17: 7 residues within 4Å: Chain A: I.33, R.36 Chain C: R.57, N.61, Y.99, R.110, L.114 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:N.61, C:Y.99 Salt bridges: C:R.57, C:R.110, A:R.36 SO4.18: 4 residues within 4Å: Chain C: R.54, S.106, A.107, Q.108 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.106, C:A.107, C:Q.108 Salt bridges: C:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niegowski, D. et al., Mus Musculus LTC4 synthase in apo form. To be Published

Release Date

2015-01-14

Peptides

Leukotriene C4 synthase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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Leukotriene C4 synthase

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