SMTL ID : 4nti.2 (1 other biounit)

Crystal structure of D60N mutant of Arabidopsis ACD11 (accelerated-cell-death 11) complexed with C12 ceramide-1-phosphate (d18:1/12:0) at 2.9 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x 1PZ: (2S,3R,4E)-2-(dodecanoylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate(Non-covalent)

1PZ.1: 14 residues within 4Å: Chain A: A.54, F.55, A.58, N.61, K.65, R.100, R.104, M.111, F.140, H.144, I.148, A.151, V.152, L.154 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.55, A:R.104, A:F.140, A:F.140, A:F.140, A:I.148, A:I.148, A:A.151, A:V.152, A:L.154, A:L.154 Hydrogen bonds: A:N.61 Water bridges: A:R.100, A:N.101 Salt bridges: A:K.65, A:R.100, A:R.104

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PEG.3: 1 residues within 4Å: Chain A: F.57 No protein-ligand interaction detected (PLIP) PEG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PEG.5: 5 residues within 4Å: Chain A: G.52, P.160, T.161, H.164, M.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.52, A:T.161, A:H.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simanshu, D.K. et al., Arabidopsis Accelerated Cell Death 11, ACD11, Is a Ceramide-1-Phosphate Transfer Protein and Intermediary Regulator of Phytoceramide Levels. Cell Rep (2014)

Release Date

2014-02-05

Peptides

accelerated-cell-death 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

accelerated-cell-death 11

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