SMTL ID : 4nto.1 (2 other biounits)

Crystal structure of D60A mutant of Arabidopsis ACD11 (accelerated-cell-death 11) complexed with C2 ceramide-1-phosphate (d18:1/2:0) at 2.15 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

2 x 1PW: (2S,3R,4E)-2-(acetylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate(Non-covalent)

1PW.1: 9 residues within 4Å: Chain A: K.56, F.57, M.60, K.65, R.100, R.104, H.144, I.148 Ligands: 1PW.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.56, A:F.57, A:M.60 Water bridges: A:K.65, A:K.65 Salt bridges: A:K.65, A:R.100, A:R.104 1PW.2: 3 residues within 4Å: Chain A: I.148, A.151 Ligands: 1PW.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.148, A:I.148, A:A.151

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 3 residues within 4Å: Chain A: A.141, P.142, R.149 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simanshu, D.K. et al., Arabidopsis Accelerated Cell Death 11, ACD11, Is a Ceramide-1-Phosphate Transfer Protein and Intermediary Regulator of Phytoceramide Levels. Cell Rep (2014)

Release Date

2014-02-05

Peptides

accelerated-cell-death 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

accelerated-cell-death 11

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