SMTL ID : 4nup.2 (1 other biounit)

Crystal structure of mouse N-cadherin EC1-2 with AA insertion between residues 2 and 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.13, N.14, D.69, E.71, D.105 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.13, A:D.69, A:E.71, A:D.105 CA.2: 6 residues within 4Å: Chain A: E.13, E.71, D.102, M.103, D.105, D.138 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.13, A:D.102, A:M.103, A:D.105, A:D.138 CA.3: 6 residues within 4Å: Chain A: N.104, N.106, D.136, D.138, N.144, D.196 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.106, A:D.136, A:D.138, A:N.144, A:D.196 CA.4: 2 residues within 4Å: Chain A: E.121, D.217 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.121, A:D.217, H2O.3, H2O.5 CA.5: 5 residues within 4Å: Chain B: E.13, N.14, D.69, E.71, D.105 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.13, B:D.69, B:E.71, B:D.105 CA.6: 6 residues within 4Å: Chain B: E.13, E.71, D.102, M.103, D.105, D.138 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.13, B:D.102, B:M.103, B:D.105, B:D.138 CA.7: 6 residues within 4Å: Chain B: N.104, N.106, D.136, D.138, N.144, D.196 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.106, B:D.136, B:D.138, B:N.144, B:D.196 CA.8: 2 residues within 4Å: Chain B: E.121, D.217 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.121, B:D.217, H2O.10, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vendome, J. et al., Structural and energetic determinants of adhesive binding specificity in type I cadherins. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-09-24

Peptides

N-CADHERIN EC1-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

N-CADHERIN EC1-2

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